PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39345.1 Da PI: 6.5118 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 187 | 235 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g DCAR_026614 187 FRGVRQRH-WGKWVAEIRLPKN---RTRVWLGTFDTAEEAAVAYDTAAYLLRG 235 8******9.**********965...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.54E-32 | 185 | 245 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-22 | 186 | 244 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-37 | 186 | 249 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 186 | 243 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-32 | 186 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 187 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-12 | 187 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 209 | 225 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDKQYPKLET FLPKELMLPS YFQEMVPGSQ NFTDHSGWNF LQSSSESDSP VDDKSSVATL 60 STCNVADLEK TKFSSGSSCI PLTFLESFPQ LHQVSHDHAS EQGSSSSSTD MKFQNLGLFL 120 NDPSVLNDVP SFQRNDQASS ECLKINENLL ASYTPEGLSD YWLSTTKTQA MKSSGRRMQK 180 PSFTKLFRGV RQRHWGKWVA EIRLPKNRTR VWLGTFDTAE EAAVAYDTAA YLLRGDYAHL 240 NFPEQKHQLK ANSLNGSTAA LLEAKLQAMS GNKKASDCRS ATSKKTCEET RTINNCQVEE 300 FKGKSGMISH EKNKKPQEVF CAENINGVDQ LSRVPSLDMD MIWDALLVSS DS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 185 | 243 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222084.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A175YQG4 | 0.0 | A0A175YQG4_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.011G157500.1 | 1e-86 | (Gossypium raimondii) | ||||
STRING | XP_006420915.1 | 6e-87 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 4e-61 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026614 |