PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026596
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36859.9 Da    PI: 4.3243
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026596genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-1890143356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++k+q++ Le+ Fek++++  +++ +LAk++gL+ rqV +W+qNrRa+ k
  DCAR_026596  90 KKRRLSKDQVQFLEKSFEKDNKLEPDRKVQLAKEIGLQPRQVAIWYQNRRARCK 143
                  56689***********************************************98 PP
2HD-ZIP_I/II125.91.8e-4089180192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrlsk+qv++LE+sFe+++kLep+rKv+la+e+glqprqva+W+qnrRAR k+kqlEkdy++Lk++yd+lk + e+L ke+e+Lr e++
  DCAR_026596  89 EKKRRLSKDQVQFLEKSFEKDNKLEPDRKVQLAKEIGLQPRQVAIWYQNRRARCKSKQLEKDYDVLKESYDKLKVDYENLLKENESLRIEVE 180
                  69**************************************************************************************8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1875147IPR009057Homeodomain-like
PROSITE profilePS5007116.66585145IPR001356Homeobox domain
SMARTSM003892.5E-1888149IPR001356Homeobox domain
CDDcd000867.51E-1890146No hitNo description
PfamPF000463.3E-1590143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1992152IPR009057Homeodomain-like
PRINTSPR000313.3E-5116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000313.3E-5125141IPR000047Helix-turn-helix motif
PfamPF021832.2E-17145186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGISSTFDGS DTTLLLKSGN LNCPSGVLES FWMSNSSPSF QDCPSKVSAS IVDFQNPPQD  60
DGRKGRLFSS LDVDEDNGEA FDPSFHRSEK KRRLSKDQVQ FLEKSFEKDN KLEPDRKVQL  120
AKEIGLQPRQ VAIWYQNRRA RCKSKQLEKD YDVLKESYDK LKVDYENLLK ENESLRIEVE  180
SMKDKMPVSE KREVNLEPVN ARDVGAKPTE DLIVQNENTP QLMIRKPEYV NSSESPAVDS  240
DSLYSVDGNL KSVFESVDSS SVFEPDYSDF SQDGEEGFSR MLLLPDLPML ETECFDDMYV  300
DHSNLAESSV GDQHLLLWTN VFDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARCKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222507.10.0PREDICTED: homeobox-leucine zipper protein HOX20-like
TrEMBLA0A175YSS40.0A0A175YSS4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-39homeobox 1