PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 240aa MW: 27008.8 Da PI: 5.3689 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.7e-20 | 114 | 174 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le++Fe+ +ps+++++eL+++l ++e++V++WFqNrRa+ k+ DCAR_026401 114 RHRWTPTPVQLQKLERVFEEgIGTPSKQKIKELTAELsqhgPISETNVYNWFQNRRARSKR 174 89*****************99******************999*****************97 PP | |||||||
2 | Wus_type_Homeobox | 93.1 | 2.5e-30 | 113 | 176 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++ Le+++++G+ tP+k++i+++taeL+++G i+++NV++WFQNr+aR+++kq DCAR_026401 113 TRHRWTPTPVQLQKLERVFEEGIGTPSKQKIKELTAELSQHGPISETNVYNWFQNRRARSKRKQ 176 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-16 | 110 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.511 | 110 | 175 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-15 | 112 | 179 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-17 | 113 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.49E-14 | 114 | 176 | No hit | No description |
Pfam | PF00046 | 8.8E-18 | 114 | 174 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MIKDYLVTEE ELELITRSME VNTNQEAQHY QNHSENNNDI LYNTDGDVDG LCMKVMTDEQ 60 IEVLRKQISA YATLSQQLAE MHRFFSAQQD LTAGLGGLYC DPLMTYGGSK ITTRHRWTPT 120 PVQLQKLERV FEEGIGTPSK QKIKELTAEL SQHGPISETN VYNWFQNRRA RSKRKQFAEA 180 PNNPEPEFEA ESESSEKTIA KDAYSQDPGS HSLDTQPGKG KSSFTSGHNT KPYSSHGSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 175 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216447.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8-like isoform X2 | ||||
Swissprot | Q5QMM3 | 3e-65 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A164UT44 | 1e-180 | A0A164UT44_DAUCS; Uncharacterized protein | ||||
STRING | EMJ10785 | 1e-69 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 6e-60 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026401 |
Publications ? help Back to Top | |||
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