PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24872.7 Da PI: 7.1631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 72 | 120 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 + y+GVr ++ +g+Wv+eIr p++ ++r++lg++ tae+Aa+a++ a++ DCAR_026342 72 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTYPTAEMAARAHDVAALTV 120 68*****998.**********843...6*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-13 | 72 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 73 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 73 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-34 | 73 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.00E-31 | 74 | 130 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAAGGQLDPA PDSLSGQTKH IPYISNTISD SSKQNKKSNS NDHASDLLSS QTKRTQCIPS 60 KRNTSSSKSK HPVYRGVRMR SWGKWVSEIR QPRKKTRIWL GTYPTAEMAA RAHDVAALTV 120 KGGAAILNFP QLAHSLPRPE SVSPRDVQAA AAKAAAMSSS SSSSPSSVFD HESYELGLGE 180 ITELPSLNVE KESSDEVLLV DSPDMWLYPA PSWAEETELD GYLISGEFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 69 | 131 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217635.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 2e-52 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A164URT5 | 1e-167 | A0A164URT5_DAUCS; Uncharacterized protein | ||||
STRING | XP_008220077.1 | 1e-54 | (Prunus mume) | ||||
STRING | EMJ26973 | 1e-54 | (Prunus persica) | ||||
STRING | XP_004291182.1 | 1e-54 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026342 |
Publications ? help Back to Top | |||
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