PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026332

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 755aa MW: 84880.5 Da PI: 8.1036

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026332	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3.1e-20	106	161	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t +q++e+e+lF+++++p+ ++reeL kklgL +qVk+WFqNrR++ k DCAR_026332 106 RKKYHRHTLDQIREMEALFKESPHPDDKQREELGKKLGLHPSQVKFWFQNRRTQIK 161 79999***********************************************9987 PP
2	START	176.4	1.8e-55	282	501	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ++ +el+k+a+++ep+W ks e +n++e+l+ + +++ +s+ea+r+sgvv +l++lv+ ++d k qW+e+++ ka+t++vi+ DCAR_026332 282 NKSIEELIKMATEGEPLWIKSFetgrEVLNYEEYLKDCSVENFarkwpngSSIEASRDSGVVLLDLPTLVQYFMDAK-QWQEMFPcmisKAATVDVIN 378 56789***************99999*********99888******************************.**************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 sg ga+qlm+aelq+++plv R ++f R+++q +a++w+ivdvS+d +++ R+ ++pSg++ie++ ngh kv+wveh+++ ++l+ DCAR_026332 379 SGegvgknGAIQLMFAELQMPTPLVTtRRVYFFRHCKQVTADKWAIVDVSIDKLESNID----ERCYKRPSGCIIEDTLNGHIKVIWVEHMECHKSLV 472 ****************************************************986....8****************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 ++l+r++v+sgla+ga +w++ lq qce+ DCAR_026332 473 PSLYRRIVNSGLAFGAGRWLKMLQLQCER 501 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-21	92	157	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.41E-19	95	164	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	103	163	IPR001356	Homeobox domain
SMART	SM00389	8.2E-19	105	167	IPR001356	Homeobox domain
CDD	cd00086	4.39E-17	106	164	No hit	No description
Pfam	PF00046	1.3E-17	106	161	IPR001356	Homeobox domain
PROSITE profile	PS50848	38.276	270	504	IPR002913	START domain
SuperFamily	SSF55961	3.43E-28	273	501	No hit	No description
CDD	cd08875	1.44E-96	274	500	No hit	No description
SMART	SM00234	1.4E-45	279	501	IPR002913	START domain
Pfam	PF01852	4.4E-43	283	501	IPR002913	START domain
SuperFamily	SSF55961	7.55E-11	530	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MDMMSNKPPL NPNQNQNPYT KDLFPSPALS LSLAGIFRHG EGTSKNNTDV EERDAAHGVG 60 IGNSIRREDV TEISSENSAL VRSYDDIEFA DDQQDDDVED DKNKKRKKYH RHTLDQIREM 120 EALFKESPHP DDKQREELGK KLGLHPSQVK FWFQNRRTQI KTTQERRGNL FLRREMIRFR 180 DENKALSDII TKSACSNCGA PASAKHTVIP SEFQQLWIEN ARLKSENKRL LEVIGKHASS 240 ESPPARSTCS PRNDQAVNMR CSLDAFSNVY GLAKSQIVGI VNKSIEELIK MATEGEPLWI 300 KSFETGREVL NYEEYLKDCS VENFARKWPN GSSIEASRDS GVVLLDLPTL VQYFMDAKQW 360 QEMFPCMISK AATVDVINSG EGVGKNGAIQ LMFAELQMPT PLVTTRRVYF FRHCKQVTAD 420 KWAIVDVSID KLESNIDERC YKRPSGCIIE DTLNGHIKVI WVEHMECHKS LVPSLYRRIV 480 NSGLAFGAGR WLKMLQLQCE RLVSFTATNV HTNNSYGVFT LAGRKSILEL AQRMTTSFYR 540 ALGASNYHTW NTATSKTGED IRIAWRKNLS DPKEPLGVVL CAVLSVWLPV SRQNLFNFLR 600 DETRRNEWQT IVNKGPVRNI ANLVKGQDQR NAVTIQAMKQ NRKSVRILQD CCTNAFESTV 660 VYAPVDISSM QSAMQGCDTS DIAILPSGFS IIPDGVESGP LLLSSGTEGG SLLTIAFQIL 720 TSNSPTENLS MESFKPVNKL VSCTLQNIKT ALRC*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MDMMSNKPPL NPNQNQNPYT KDLFPSPALS LSLAGIFRHG EGTSKNNTDV EERDAAHGVG  60
IGNSIRREDV TEISSENSAL VRSYDDIEFA DDQQDDDVED DKNKKRKKYH RHTLDQIREM  120
EALFKESPHP DDKQREELGK KLGLHPSQVK FWFQNRRTQI KTTQERRGNL FLRREMIRFR  180
DENKALSDII TKSACSNCGA PASAKHTVIP SEFQQLWIEN ARLKSENKRL LEVIGKHASS  240
ESPPARSTCS PRNDQAVNMR CSLDAFSNVY GLAKSQIVGI VNKSIEELIK MATEGEPLWI  300
KSFETGREVL NYEEYLKDCS VENFARKWPN GSSIEASRDS GVVLLDLPTL VQYFMDAKQW  360
QEMFPCMISK AATVDVINSG EGVGKNGAIQ LMFAELQMPT PLVTTRRVYF FRHCKQVTAD  420
KWAIVDVSID KLESNIDERC YKRPSGCIIE DTLNGHIKVI WVEHMECHKS LVPSLYRRIV  480
NSGLAFGAGR WLKMLQLQCE RLVSFTATNV HTNNSYGVFT LAGRKSILEL AQRMTTSFYR  540
ALGASNYHTW NTATSKTGED IRIAWRKNLS DPKEPLGVVL CAVLSVWLPV SRQNLFNFLR  600
DETRRNEWQT IVNKGPVRNI ANLVKGQDQR NAVTIQAMKQ NRKSVRILQD CCTNAFESTV  660
VYAPVDISSM QSAMQGCDTS DIAILPSGFS IIPDGVESGP LLLSSGTEGG SLLTIAFQIL  720
TSNSPTENLS MESFKPVNKL VSCTLQNIKT ALRC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215828.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A164URJ9	0.0	A0A164URJ9_DAUCS; Uncharacterized protein
STRING	EMJ18359	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6228	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_026332

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]