PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026312
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 390aa    MW: 45030.4 Da    PI: 4.4884
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026312genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.83.7e-15157241286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +L++a  ++  + +r++l+   W+ev++k+ ++ ++ r+ +qC+++++ l+k+ykk+k   ++   +++s+++yf++++
  DCAR_026312 157 WTEHETFVLLDAWGDRFLQRGRKSLRSEEWQEVAEKVsQQSKLVRTDTQCRNRLDTLKKKYKKEKMKLQGM-MDTTSKWVYFKKMN 241
                  *************************************778899**************************97.66777*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.202155214IPR017877Myb-like domain
PfamPF138372.7E-20156242No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4157221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDDAEDPYSE SRGFESSQCP KIRVRNVSYP RNDGDQYVEG DDDTEVDEPN EEEEEEEGDG  60
NEEDIIQLNG KAEDVSDEDD VLDEEGNEDG DDSDHDDENN SNDYRRIESD LHRQPKKRKM  120
KSLLSSYEFA PRVPAPLAMT KSVPKPSHGG RNALSDWTEH ETFVLLDAWG DRFLQRGRKS  180
LRSEEWQEVA EKVSQQSKLV RTDTQCRNRL DTLKKKYKKE KMKLQGMMDT TSKWVYFKKM  240
NMLLSSTPQQ PRLSRRVNSV NSEYVTQYTR VPLNRACGID ELSNSPENSE SVEAEEKGSD  300
LLPPKRTSRV DGGSFRLLAE SITKFSDIYE KIESSKRKQM LELERMRMDF FRELEMQKRQ  360
ILERASAEIA SIRRGDDEQN DDSAENFSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218272.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A164UR110.0A0A164UR11_DAUCS; Uncharacterized protein
STRINGcassava4.1_009108m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-54Trihelix family protein