PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026075
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 280aa    MW: 32512.7 Da    PI: 4.352
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026075genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.6e-204093356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+++++++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  DCAR_026075 40 KKRRLKADQIQFLEKSFETDNKLEPERKVQLAKELGLQPRQVAIWFQNRRARWK 93
                 566899***********************************************9 PP
2HD-ZIP_I/II126.98.7e-4139129191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+++q+++LE+sFe+++kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++L+++y++lk++ ++L +e+e+L++e+
  DCAR_026075  39 EKKRRLKADQIQFLEKSFETDNKLEPERKVQLAKELGLQPRQVAIWFQNRRARWKTKTLEKDYDVLQNSYNSLKADYDNLLAEKEKLKAEV 129
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-192595IPR009057Homeodomain-like
PROSITE profilePS5007117.6863595IPR001356Homeobox domain
SMARTSM003892.1E-193899IPR001356Homeobox domain
PfamPF000464.3E-174093IPR001356Homeobox domain
CDDcd000864.59E-184095No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2042103IPR009057Homeodomain-like
PRINTSPR000313.9E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000313.9E-67591IPR000047Helix-turn-helix motif
PfamPF021834.3E-1495136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVSFQDAKRK NPYDGFFMRS YDEEEIGDEE YDEYFQQPEK KRRLKADQIQ FLEKSFETDN  60
KLEPERKVQL AKELGLQPRQ VAIWFQNRRA RWKTKTLEKD YDVLQNSYNS LKADYDNLLA  120
EKEKLKAEVL DLTDKLLLKE DKGSKTVVFD KQKVSAAFQQ ERVSNDISVG EVLSNSVMDC  180
KQEDHNSVKS DAVDSDSPHY SDEVYSSFME PVDRSYVFEP AQSDISQDEE DDMGNNLFLP  240
SYHVFSKTED GSYSDQPSNS SYFGFPVEDH TFGFWGTEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDARKUROC0.0D26575.1 Daucus carota mRNA for DNA-binding protein (transcriptional regulator), complete cds, CHB3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219509.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A161ZR590.0A0A161ZR59_DAUCS; Uncharacterized protein
TrEMBLQ434270.0Q43427_DAUCA; DNA-binding protein
STRINGEOY217131e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-42homeobox 1
Publications ? help Back to Top
  1. Kawahara R,Komamine A,Fukuda H
    Isolation and characterization of homeobox-containing genes of carrot.
    Plant Mol. Biol., 1995. 27(1): p. 155-64
    [PMID:7865785]