PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026058

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 470aa MW: 51007 Da PI: 7.712

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026058	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rn+PvG+grrknk+s DCAR_026058 123 PDKILPCPRCNSMDTKFCYYNNYNVSQPRHFCKSCQRYWTAGGTMRNMPVGAGRRKNKSSD 183 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	116	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MGEEKDLGIK LFGKKIVLTE AEKVPAGSGQ DSGGVRSGEG KGGSLGGEDG SDGEKALVEE 60 KGEEKSQDKE ASPITNESKG STGGGDSPKT PSINEENATL KPPNTDNEQS DATDTQEKTL 120 KKPDKILPCP RCNSMDTKFC YYNNYNVSQP RHFCKSCQRY WTAGGTMRNM PVGAGRRKNK 180 SSDSHCRHMT VSVALRAAGI DPSNGIHNGA IKNNETVLSF GADSSLGESM SSVFIAEKKV 240 PNSIQNGLQK PGVAIPCKGG EHVDDCSSRS SNKKLNSNME RKKDGTAEPE VHGIQGFPTQ 300 VPFHPTLPWP CPWNSTVPMQ AIYPPGVPFP YYPTPYWNYN VPASWSIPWL QPPPQVAHQD 360 ASIYDSKSQV LGKHSREGDL LRPINVEDSE HCKQNDSERS VLVPKSLRID DLDETAKGSI 420 FASLGIKNDS ISKAFQPKKD EKNNVLKPSP ILNANPAAMS RSLRFQERV*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MGEEKDLGIK LFGKKIVLTE AEKVPAGSGQ DSGGVRSGEG KGGSLGGEDG SDGEKALVEE  60
KGEEKSQDKE ASPITNESKG STGGGDSPKT PSINEENATL KPPNTDNEQS DATDTQEKTL  120
KKPDKILPCP RCNSMDTKFC YYNNYNVSQP RHFCKSCQRY WTAGGTMRNM PVGAGRRKNK  180
SSDSHCRHMT VSVALRAAGI DPSNGIHNGA IKNNETVLSF GADSSLGESM SSVFIAEKKV  240
PNSIQNGLQK PGVAIPCKGG EHVDDCSSRS SNKKLNSNME RKKDGTAEPE VHGIQGFPTQ  300
VPFHPTLPWP CPWNSTVPMQ AIYPPGVPFP YYPTPYWNYN VPASWSIPWL QPPPQVAHQD  360
ASIYDSKSQV LGKHSREGDL LRPINVEDSE HCKQNDSERS VLVPKSLRID DLDETAKGSI  420
FASLGIKNDS ISKAFQPKKD EKNNVLKPSP ILNANPAAMS RSLRFQERV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215148.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A161X8V2	0.0	A0A161X8V2_DAUCS; Uncharacterized protein
STRING	XP_009619973.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-71	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	DCAR_026058