PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026052

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 331aa MW: 36834 Da PI: 4.6372

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026052	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.9	5.5e-25	138	188	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k ++ e++s yF++pi++AA e++v+lT+LKr+CR +GI+RWPhRk+ sl DCAR_026052 138 SKMLTREEISGYFYMPITQAAMEMNVGLTYLKRRCRDLGIRRWPHRKLMSL 188 5789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	124	209	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-20	141	188	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAAHSTKAWS DSEAAASAGE DIFTLPSLDC SGFSGYDSST YGIPLPDNND SFSWDDLVPR 60 PSSPVKDEFF CGPLVPRGSG LGEWKDDEMM DIFRGQGQVQ QPLLLCDKSM VVNGEEEQYK 120 ARSCRSAVGK QKGCGSSSKM LTREEISGYF YMPITQAAME MNVGLTYLKR RCRDLGIRRW 180 PHRKLMSLQS LINNVQEIGN REGDAANNEK LKEAIELLEQ EQRRIEAEPD VKLEDKTKRL 240 RQACFKANYK KRKSAINVGQ EDLLMLTDDN SSSRTYSPAD DRSSSSSTGR YIGADFTSDH 300 LTFPGDLNVD DLEMESLFLD SEASPTNTSY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017219250.1	0.0	PREDICTED: uncharacterized protein LOC108196464
TrEMBL	A0A164UJY7	0.0	A0A164UJY7_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g06250.t01	5e-60	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-50	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	DCAR_026052