PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 314aa MW: 35002.8 Da PI: 7.2517 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.9 | 2.2e-32 | 95 | 149 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++Y+eClkNhAas+Ggh+vDGCgEfmps geegt++a+kCaAC+CHRnFHRre e DCAR_025947 95 RCQYRECLKNHAASIGGHVVDGCGEFMPS-GEEGTPEAFKCAACECHRNFHRREAE 149 689*************************9.999********************987 PP | |||||||
2 | Homeobox | 17.5 | 7e-06 | 249 | 309 | 1 | 57 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt+ftkeq +++ e+ e k ++ + ee ++L ++lg++ ++ kvW +N ++ +kk DCAR_025947 249 KRFRTKFTKEQKDRMHEVAEkmgwKIQKQDDEEVQQLCQELGVKRQVFKVWMHNNKQAMKK 309 789*************9999666668999****************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 88 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.8E-30 | 96 | 148 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-30 | 97 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.348 | 98 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.19E-20 | 236 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-30 | 240 | 310 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.961 | 246 | 310 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 4.3E-26 | 248 | 305 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 9.21E-5 | 249 | 311 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEGLQSSLDF TSNSTQPNQD SSAPKLPSGQ TLDQFRQFYV HQHQRPEPTQ PDPDPDTIPD 60 PDPPQLGAAT SGAPNSSTPP AQLPRQEPEV ASPVRCQYRE CLKNHAASIG GHVVDGCGEF 120 MPSGEEGTPE AFKCAACECH RNFHRREAEG GESRQFATPN VYYPHNPNGI NINSLRNANH 180 QSQILPTRHQ HRHFPNHFSH SLASPTGPVM MAFGGRGPEE SSSEDLNMFQ SPGGGQHMGL 240 PSSYSGSKKR FRTKFTKEQK DRMHEVAEKM GWKIQKQDDE EVQQLCQELG VKRQVFKVWM 300 HNNKQAMKKK QDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-21 | 248 | 304 | 17 | 73 | ZF-HD homeobox family protein |
1wh7_A | 3e-21 | 247 | 304 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216163.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-63 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A161ZN87 | 0.0 | A0A161ZN87_DAUCS; Uncharacterized protein | ||||
STRING | EOX91076 | 5e-85 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-65 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025947 |