PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24638.5 Da PI: 6.6875 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.4e-19 | 55 | 106 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++eq++ Le +F++++++ e++ +LA++lgL+ rqV vWFqNrR+++k DCAR_025935 55 RKLSDEQVNMLELHFQNEHKLESERKDRLAAELGLDPRQVAVWFQNRRTRYK 106 5899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 111.6 | 5.1e-36 | 53 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE +F++e+kLe+erK +la eLgl+prqvavWFqnrR R+k+k+lE++y++Lk+++++ + e+++L++ev +L+e+l+e DCAR_025935 53 RKRKLSDEQVNMLELHFQNEHKLESERKDRLAAELGLDPRQVAVWFQNRRTRYKSKKLEEEYSRLKSEHENAVFEKCQLKTEVLKLKERLSE 144 8**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.876 | 48 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 51 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-18 | 52 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.62E-14 | 53 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 55 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-16 | 55 | 106 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.7E-5 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-5 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSSSLNNQFD DQMVVLNHYY PDVYTQVASV QGSETKPRRR RKNNKAESNS GFRKRKLSDE 60 QVNMLELHFQ NEHKLESERK DRLAAELGLD PRQVAVWFQN RRTRYKSKKL EEEYSRLKSE 120 HENAVFEKCQ LKTEVLKLKE RLSENEEKMQ KLLEQSNGAS SNSPSSSFSA EIMEPPFLGG 180 FGMEGLESVF CVTGNNYDTT GMEYWHNFYD I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 55 | RRKNNKAESNSGFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017215861.1 | 1e-157 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 7e-60 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 8e-60 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A161ZQV2 | 1e-156 | A0A161ZQV2_DAUCS; Uncharacterized protein | ||||
STRING | Solyc02g085630.2.1 | 1e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-59 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025935 |
Publications ? help Back to Top | |||
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