PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 172aa MW: 19303 Da PI: 5.1367 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 1 | 45 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ErrRR+r+N++++ Lr+++Pk skK++ +i+ +++Y+k+Lq DCAR_025855 1 MAERRRRKRLNDRLSMLRSIVPKI----SKKMDRTSIVGDTIDYVKDLQ 45 58*********************6....6*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 5.0E-11 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.58E-6 | 1 | 49 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-17 | 1 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-11 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.824 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-15 | 1 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00212 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAERRRRKRL NDRLSMLRSI VPKISKKMDR TSIVGDTIDY VKDLQERIHK LKEEVDTEAE 60 SNHMNLMASS NEDTNEVIPI SPTKFDVERK DESTRIEICC ATKPGLLLST VETIEALGLD 120 IQQCVVSCFS DFSLQATCSE AVDNQKFVGC EDIKQELCRN AGYAGYGGKC F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216686.1 | 1e-114 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 3e-59 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A161ZQN1 | 1e-123 | A0A161ZQN1_DAUCS; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP16890_001 | 2e-66 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-61 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025855 |
Publications ? help Back to Top | |||
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