PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_025834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 27609.2 Da PI: 8.3912 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 104 | 158 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+ ++++ ++++eLA++l+L rqV vWFqNrRa+ k DCAR_025834 104 RKKLRLTKAQSALLEESFKHLSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 158 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.2e-39 | 104 | 193 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF++ ++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l DCAR_025834 104 RKKLRLTKAQSALLEESFKHLSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKELQELK-AL 193 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-17 | 93 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-17 | 99 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-14 | 102 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-15 | 104 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-15 | 104 | 161 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.8E-10 | 160 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.5E-25 | 160 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MGFDNVCNTG LVLGLGLSSE TTAPARPTPK MAVSMGSEPD LTLGLISGAP YKVVDSGGAD 60 SGGSSFSSVK REREIGSFEE VETTVVDHKA RGVSDEDDDG GNGRKKLRLT KAQSALLEES 120 FKHLSTLNPK QKQELARELK LRPRQVEVWF QNRRARTKLK QTEVDCEYLK KCCETLTDEN 180 RRLQKELQEL KALKVSQPLY MQLPAATLTM CPSCERVGGG AGGTTDTSSK SPRACPFGSK 240 PHFYNPFTSS SAAC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 152 | 160 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017215702.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2 | ||||
Swissprot | P46604 | 1e-86 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A161Y8I8 | 0.0 | A0A161Y8I8_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055199 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-76 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_025834 |
Publications ? help Back to Top | |||
---|---|---|---|
|