PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 297aa    MW: 32272.5 Da    PI: 8.1413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025760genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-19550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
      DCAR_025760  5 KGPWSPEEDDMLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50
                     79******************************.***********985 PP

2Myb_DNA-binding55.81.1e-1759101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
      DCAR_025760  59 AFTPEEDETIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 101
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.285155IPR017930Myb domain
SuperFamilySSF466891.95E-32298IPR009057Homeodomain-like
SMARTSM007171.6E-17453IPR001005SANT/Myb domain
PfamPF002491.8E-19550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26658IPR009057Homeodomain-like
CDDcd001677.79E-17749No hitNo description
SMARTSM007171.2E-1456104IPR001005SANT/Myb domain
PROSITE profilePS5129421.22957106IPR017930Myb domain
PfamPF002496.3E-1559101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2359105IPR009057Homeodomain-like
CDDcd001673.54E-1259102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDRIKGPWSP EEDDMLQQLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
TPEEDETIIR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCCSMS ADEAEDFPDP  120
RPLKRSVSDG SGLPGSGLYL NPPSPDGSDV SESSLHVTAS TCHVFKPTPG RTCGLFPAQI  180
ETTSVGKNDP PTSLSLSLPG ISSSPTESTQ LPPNSVPVIP APAATVNPIP VTQQPPAVSA  240
PIVNAEFLAV MQEMIRTEVR NYMSGMSIQE MNNNNNNSVE GFRNALVKRI GISKID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-4141063105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215342.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-100MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A164UBU90.0A0A164UBU9_DAUCS; Uncharacterized protein
STRINGXP_007156759.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-93myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]