PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_025680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 262aa MW: 29922.9 Da PI: 8.443 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.4 | 1.1e-12 | 1 | 77 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++pk+f+++h++k + l+ + + W v + +++g+++l++GW eF+ L g ++vF+ ++s+f +v+vf++ DCAR_025680 1 MIPKEFVKNHKEK--LRGRVHLKATGSAPWPVDV--VRTKGEVWLQNGWPEFATFYSLSFGSVLVFESFKKSKF--RVRVFDQ 77 69*****999766..3447***************..9******************************4444555..9999997 PP | |||||||
2 | B3 | 40.2 | 6.2e-13 | 166 | 246 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ps+v +sg + + ++f+e++ + ++++ +++++ +++W + + + +++r++l ++Wk+F k+n L++ D++vF+l++ + DCAR_025680 166 NIRPSYVIRSG-VDVRRSFLETYTKWEKRG-QVIFRV-GNETWPIGY--TLCGERCTLNTNWKKFLKDNSLEVDDVCVFELIDPAR 246 45678888887.999********5444444.455554.779******..89999999***********************997433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.46E-10 | 1 | 76 | No hit | No description |
Pfam | PF02362 | 1.3E-9 | 1 | 77 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.02E-15 | 1 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.83 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.019 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-18 | 155 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-17 | 156 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.17E-10 | 161 | 254 | No hit | No description |
PROSITE profile | PS50863 | 9.953 | 162 | 257 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-6 | 163 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-11 | 164 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MIPKEFVKNH KEKLRGRVHL KATGSAPWPV DVVRTKGEVW LQNGWPEFAT FYSLSFGSVL 60 VFESFKKSKF RVRVFDQSAT EINYPLNRDL SLDDGESVPQ VRKREAEIGG SSKKTRSSTE 120 EAFHDELNLK QEEANGDGGS ASKEEIERVV NLAAAFESEN PFFVINIRPS YVIRSGVDVR 180 RSFLETYTKW EKRGQVIFRV GNETWPIGYT LCGERCTLNT NWKKFLKDNS LEVDDVCVFE 240 LIDPARKLFN VIVYQPKREA A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017215171.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A164U9N7 | 0.0 | A0A164U9N7_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-17 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_025680 |