PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025679
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 828aa    MW: 95169.3 Da    PI: 6.6
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025679genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.3e-1416107199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+ +++ +  ++ l++pk+f+++h+++      + l+ + +  W v +   +++g+++l++GW eF+k   L  g  +vF++   + f+ +v+vf+
  DCAR_025679  16 FFKIIVSEIS-PQSKLMIPKEFVKNHEEE--LRGRVHLKAPGSAAWPVDV--VRTQGEVWLQNGWPEFAKFYSLSFGSLLVFEYL--EHFNIRVRVFD 106
                  5666544444.4456********999755..4558***************..*******************************76..58999****99 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_025679 107 T 107
                  7 PP
2B339.21.2e-122102901697
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + + k+f+e++ + k+++k  ++ +   rsW v ++++ ++ r++lt+GWk F  +n Lk+ D++vF+l++ s++ ++v +f
  DCAR_025679 210 VEVRKSFLETFRKWKNKGKGQVIFQIGRRSWLVGYTFSAGD-RCTLTAGWKTFRTDNSLKVDDVCVFELINPSTKLFKVIIF 290
                  5667788888844455555555567788*******876664.799************************9877665666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-1712108IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-1215106No hitNo description
PROSITE profilePS5086312.43515108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1715108IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-1116108IPR003340B3 DNA binding domain
PfamPF023624.2E-1117107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18188293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17189292IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-11194290No hitNo description
PROSITE profilePS5086310.8195293IPR003340B3 DNA binding domain
SMARTSM010197.9E-5195293IPR003340B3 DNA binding domain
PfamPF023621.5E-9196291IPR003340B3 DNA binding domain
SuperFamilySSF578891.92E-15308385No hitNo description
PfamPF031071.7E-10336379IPR004146DC1
SMARTSM0024919352432IPR001965Zinc finger, PHD-type
SuperFamilySSF578893.03E-14364445No hitNo description
PfamPF031072.5E-6390440IPR004146DC1
PfamPF031071.5E-6511570IPR004146DC1
Gene3DG3DSA:3.30.60.200.001539576No hitNo description
SuperFamilySSF578896.28E-15554642No hitNo description
PfamPF031073.7E-8584630IPR004146DC1
SuperFamilySSF578894.6E-10665746No hitNo description
Gene3DG3DSA:3.30.40.102.7E-5711744IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002490.029713786IPR001965Zinc finger, PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MKLASGSIHP AKAQRFFKII VSEISPQSKL MIPKEFVKNH EEELRGRVHL KAPGSAAWPV  60
DVVRTQGEVW LQNGWPEFAK FYSLSFGSLL VFEYLEHFNI RVRVFDTSAT EIDYSLTCDP  120
NLDDGESVPR VRKRDSSRRC ELVRACKKTR ASTEETFHNG FKLKQEKANG DRGSAKEEIE  180
RAVNLAASFK SEKPFFIIHM RPTYVSGVSV EVRKSFLETF RKWKNKGKGQ VIFQIGRRSW  240
LVGYTFSAGD RCTLTAGWKT FRTDNSLKVD DVCVFELINP STKLFKVIIF QAKSRPDEYI  300
CDVCSRLVKF AYACEECTVD VCVFCGLEQR VLCHEGHQQH KLTLMNREAL FKCDACGEED  360
KDSSYVCTTC EFWIHKTCAL SPYIIPTQAY HHHPLFLIYS IPQMHRQFER ECNICHEVVY  420
NINWMYYCHK CTYFVHMRCA MSSDTVPIVT DTEAADIDDE TVLLQFPLPH EESLFDLIIT  480
QCGKFQVDLQ GEGESSTPIP DNPHIIEGHW SHENHQLEQL QFATSNDDND DNDDDRRVMI  540
CNGCIQPITD THPSYYACVQ CGFFLHSFCA TKLPPELPRG ASSFHPSHSL VLYMSDQFYG  600
YVDCEVCGYC TNGFYYKCED CDIKIDIRCA FLPKRIKHRS HKRHSLVQRP FSNSICSVSN  660
LKITNGVEYA CETCSSFQIH IDCVIYPSRM NHRYDLHAVT LREPPFFYEG VFYCEICEEQ  720
VNNQRLLYHC DECDHSFHHY CLRWYESFKF GGIINRIIQE QPHALALVLK RTARDKSPLY  780
ICGICEEGYN FLFFFECGGC GFLVCCNCFG EITDSTNSTS GSGSVSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217388.10.0PREDICTED: uncharacterized protein LOC108194964
TrEMBLA0A164U9M60.0A0A164U9M6_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein