PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025470
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 407aa    MW: 44666.4 Da    PI: 6.177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025470genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-184292256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  DCAR_025470 42 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 92
                 689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-294299IPR001471AP2/ERF domain
SMARTSM003802.0E-3542105IPR001471AP2/ERF domain
PfamPF008473.2E-124291IPR001471AP2/ERF domain
CDDcd000184.43E-174299No hitNo description
PROSITE profilePS5103220.5084299IPR001471AP2/ERF domain
PRINTSPR003671.4E-74354IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2043100IPR016177DNA-binding domain
PRINTSPR003671.4E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MQFDSTSGSA SKVVGASGMG QPNGPEGVRG RKKSATSRGH HRFVGVRQRP SGRWVAEIKD  60
SLQKVRLWLG TFDTAEDAAR AYDDAARALR GANARTNFEL PQSSTRNSLP ENAEPFSFEQ  120
ACGKDEAEEG LLGALKAKLY DGNNLRSLIC PQLNTTTPLP ALQQQQQSSH VLTVSQQKNH  180
VTKRDHLAMS MPFMATPTKT TPNQLMLPSN FEQPPKKIDN NFLPNDLNSS HDNNPIDFMA  240
IHEQQFGGMK WQNQGTDITS SMVWQQQPND MPWQPSSDLN MHIPQDQNAF FTNSTTMTTL  300
PWQFSGTGTQ SAMIDHQMSH YTDGLCYNNQ QLSNSNKMSE YNIPVTYGIT NQVANEGELD  360
VGVCGGGSTI WSPDQQFTSG WGSTGNGGVN ISNNWEQLLY ASSVLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1440981271Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164U3M80.0A0A164U3M8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-15related to AP2 11