PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26803.9 Da PI: 7.6071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++++++G g+W++++++ g++R++k+c++rw +yl DCAR_025451 13 KGPWTPEEDKLLSEYINLHGDGRWSSVSKYSGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ DCAR_025451 66 KGNLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110 6889******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.329 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.2E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.47E-13 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 19.28 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 68 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.64E-10 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCNSGSEQG WRKGPWTPEE DKLLSEYINL HGDGRWSSVS KYSGLNRSGK SCRLRWVNYL 60 RPGLKKGNLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKIKTRPYQK 120 QARRRAEGHG MPNNSIQQTA ENVHFMKNDI PATQDDDHGE VNITEKVDIT TPPQGNQEMG 180 FAHPNMTNYY PSSSPMINYY INQEIASCSD TITLDDLWGS FWNLDDPHTG IRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 13 | 115 | 7 | 108 | B-MYB |
1h8a_C | 3e-25 | 13 | 115 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217364.1 | 1e-177 | PREDICTED: myb-related protein 340 | ||||
TrEMBL | A0A164U355 | 1e-175 | A0A164U355_DAUCS; Uncharacterized protein | ||||
STRING | XP_010113169.1 | 5e-78 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 6e-70 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025451 |