PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 315aa MW: 35017.7 Da PI: 7.789 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.3 | 9.9e-33 | 49 | 163 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.ksk 98 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak i+el+ ++ ++ ++++ ++ sas+ +++++ ++ + + DCAR_025437 49 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKNDIDELPPLQVPPGTFSQFHQAMLSASHGVNAAQSVEKSgQVN 146 689*************************************************************9999977766666666664444433333322333 PP TCP 99 ksqksaasalnlakesr 115 +++ + s++n+ +s DCAR_025437 147 WNDHLELSTSNYWSNSD 163 33333333333332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-30 | 51 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.74 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MNSSSKEADY TPKQEDKSSE SKILSKASSS STSWSRLKDP RIVRVSRAFG GKDRHSKVCT 60 VRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AAKNDIDELP PLQVPPGTFS 120 QFHQAMLSAS HGVNAAQSVE KSGQVNWNDH LELSTSNYWS NSDGNLRDQM KSKEIVEETK 180 RKQDGDLDQG SNDAYTASSN FFERGNQSNP PAGMLINNMI PISNPSYLRW DPSNLSRSHT 240 EDIPISQSSS LSMPSGSQFV VYPHAREFDP KQMFNFQMLG SNIASQNSPF SNPPFTPFHL 300 SRDSYSGSAP NKDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217580.1 | 0.0 | PREDICTED: transcription factor TCP17 | ||||
TrEMBL | A0A161ZM29 | 0.0 | A0A161ZM29_DAUCS; Uncharacterized protein | ||||
STRING | EOY03699 | 8e-84 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-47 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025437 |