PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025387
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 410aa    MW: 45762.3 Da    PI: 4.3502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025387genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-194897255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  DCAR_025387 48 RFIGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 97
                 689******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.29E-3147104No hitNo description
SuperFamilySSF541713.07E-1948105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2748104IPR001471AP2/ERF domain
PROSITE profilePS5103219.41448105IPR001471AP2/ERF domain
PfamPF008471.4E-134897IPR001471AP2/ERF domain
SMARTSM003802.7E-3448111IPR001471AP2/ERF domain
PRINTSPR003676.0E-84960IPR001471AP2/ERF domain
PRINTSPR003676.0E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGRKRKAGEA TDDQDRSSGE ADMAWDKMVK DAAAASAVLS GARGGRKRFI GVRQRPSGRW  60
VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGANT RTNFWPCSQS SSSAPALPPK  120
ISNILLHRLK ARNNSLAASS NSPVPVNHEE KAQQGYEEEV TEFSDAQFTD FLNDMEDYIP  180
INEMLNNAGA STGEHTNTIE YTCTSFDSCL TDQNLSPQDQ GRDFDWVHNW TDHSEQSSGG  240
QCSSGEEYVE PDFEEDEGTE LCATDFQFVD ELGSTYCSPF EITEEIALPI EQAVCDGEPT  300
MISEAMRRMK YERKFSASLY AFNGITECLK FKLKSANATH KVGSDQLSKL RNACNKNQQD  360
QKEAEEERVK TPEEELEASP YMESPFHSNE NELSLWSSLD LQPICFVNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1341104971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217352.10.0PREDICTED: uncharacterized protein LOC108194927
TrEMBLA0A161ZLZ20.0A0A161ZLZ2_DAUCS; Uncharacterized protein
STRINGcassava4.1_008867m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-21related to AP2 11