PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 24967.5 Da PI: 5.9747 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 30 | 82 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq+++Le+ Fe +++ e++ +LA++lgL+ rq+ +WFqNrRa++k DCAR_025369 30 KRRLNSEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 82 45799***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.2 | 2e-42 | 28 | 119 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+krrl++eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++d+lk++n++L++ +++L+ el DCAR_025369 28 ERKRRLNSEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDILKRQFDSLKADNDSLRSRNKQLQGELI 119 69*************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-20 | 20 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-19 | 27 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.62E-15 | 29 | 85 | No hit | No description |
Pfam | PF00046 | 4.0E-16 | 30 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 31 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.2E-6 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-6 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-15 | 84 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSYTGIERCE EVRAEDDMSD DGSQSVGERK RRLNSEQVKA LEKSFELGNK LEPERKMQLA 60 RSLGLQPRQI AIWFQNRRAR WKTKQLERDY DILKRQFDSL KADNDSLRSR NKQLQGELIA 120 LKARESGNED RNINLNKETH EGSWSNASEN EHSSDHVNTT AGLTQIFLQS SSSAPDLLQA 180 HQGLNQTVPD QAFVSMFNGI DEHPAGFWPW PEQQNFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | ERKRRL |
2 | 76 | 84 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217862.1 | 1e-160 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 8e-66 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A164U155 | 1e-159 | A0A164U155_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0017s11800.1 | 4e-82 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 3e-68 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025369 |