PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 20091.3 Da PI: 4.7868 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3e-19 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p g ++r++lg+f t+e+Aa+a++aa++ ++g DCAR_025014 14 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDAAALHFRG 63 69****999.**********8...325***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.56E-23 | 13 | 73 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-22 | 13 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-36 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.538 | 14 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 14 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGDHNNHNGG TSSAYRGVRK RKWGKWVSEI REPGTKTRIW LGSFETPEMA AAAYDAAALH 60 FRGREARLNF PELMDYLPRP ASSSADDIRL AAQESAMRLK RSTEEPECGG SSSSSYRLPV 120 TVGLSPSQIQ AINESPLDSP KMWNRFNDGL MLDDQRTYFC NDMEIDAWEE IPDDSLWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-16 | 15 | 71 | 6 | 63 | ATERF1 |
3gcc_A | 8e-16 | 15 | 71 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217944.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 9e-63 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A161X6B0 | 1e-130 | A0A161X6B0_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.005G116500.1 | 2e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-56 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025014 |