PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024990
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 311aa    MW: 33685.6 Da    PI: 9.1411
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024990genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07118141225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  kt++C  +     Ck+Gd+C+FaH
  DCAR_024990 118 KTKICTKYNSPEGCKFGDKCRFAH 141
                  8999999999999*********** PP
2zf-CCCH34.92.6e-11277302127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C +fa+ G C +GdrC+FaHgp
  DCAR_024990 277 FKTKMCENFAK-GSCTFGDRCHFAHGP 302
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.5545984IPR000571Zinc finger, CCCH-type
PfamPF146081.97181No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-10114144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7115143IPR000571Zinc finger, CCCH-type
SMARTSM003560.035116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817116144IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5118141IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-15177253IPR004088K Homology domain, type 1
SMARTSM003224.1E-11181251IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.8E-15182250IPR004088K Homology domain, type 1
PROSITE profilePS5008414.32182246IPR004088K Homology domain, type 1
CDDcd001051.86E-14184247No hitNo description
PfamPF000133.0E-10184248IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.0E-17270307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9275307IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-7276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.093276303IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLLLGTAFLR DPSLPHSSKN YFEMGIVALK RDLHPNHPVS VPIINWFLFE YKPILYMTIC  60
IASLGKITSG CQFGEGCHFL HYVPGGYSAV GQMTNHGGPT ARNPGLPSFA DAPSPTLKTK  120
ICTKYNSPEG CKFGDKCRFA HKDEFGRPGF EDRRSFGSMP QYGRRAEAPS PGLAAAANFG  180
SSATAKISID ASLAGPIIGK GGVNSKQICR ETGVKLAIRD HDTDPNQRNI ELEGNFEQIK  240
IASDMVHELI MNLRAATGGP ARNPRSMPMQ APPANNFKTK MCENFAKGSC TFGDRCHFAH  300
GPNELRKTAP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215623.11e-180PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-82C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A161Y6D10.0A0A161Y6D1_DAUCS; Uncharacterized protein
STRINGcassava4.1_012715m6e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-56C3H family protein