PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_024771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24738.1 Da PI: 4.6341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 8.1e-16 | 36 | 86 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr +k +g++v+eIr p++ r r++lg++++a +Aa+a +aa +l+g DCAR_024771 36 CKYTGVRKRK-WGKFVSEIRLPNS---RERIWLGSYDSAVKAARAFDAALYCLRG 86 79*****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.27E-25 | 36 | 96 | No hit | No description |
Pfam | PF00847 | 1.9E-8 | 36 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.915 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-27 | 37 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-26 | 37 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 37 | 95 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-7 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVKTVTNESG SGSNEAAARH GNQSRISKSS ADSSSCKYTG VRKRKWGKFV SEIRLPNSRE 60 RIWLGSYDSA VKAARAFDAA LYCLRGPDSK FNFPENPPEI PGGRSLTPPQ IQVEAARFAH 120 SGPRVVSDHD SSSSSDPSDE LQHVDSPSVS DGATQVNTEA GVDNMLMDQF KTMGWESNYS 180 VPDLGYFPSF EDFQDDLFMR PVTTGPVDNE VEESCDQFGS FLWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 37 | 94 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB188296 | 0.0 | AB188296.1 Daucus carota C-EF8 mRNA for embryonic element binding Factor 8, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017219262.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A161ZN13 | 1e-166 | A0A161ZN13_DAUCS; Uncharacterized protein | ||||
STRING | XP_010099089.1 | 1e-56 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_024771 |