PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024737
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 325aa    MW: 36380.8 Da    PI: 7.8914
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024737genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed++l+d ++++G g+W+  +++ g++R++k+c++rw++yl
      DCAR_024737 14 KGAWTSGEDKILADFIHLHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding39.11.8e-1267138147
                      TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++l+++++++lG++                           W++Ia +++ gRt++++k++w++ 
      DCAR_024737  67 RGNISSDEQDLIIRLHRLLGNRqatlsshlfppffnllraflseasfsAWSLIAGRLP-GRTDNEIKNYWNTT 138
                      78999*****************************************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129421.403965IPR017930Myb domain
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-211465IPR009057Homeodomain-like
CDDcd001677.29E-101661No hitNo description
PROSITE profilePS500908.60662139IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-1965142IPR009057Homeodomain-like
SMARTSM007173.3E-966141IPR001005SANT/Myb domain
PfamPF002491.1E-967138IPR001005SANT/Myb domain
CDDcd001671.19E-671139No hitNo description
SuperFamilySSF466897.86E-21111140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRSPCCSKV GLNKGAWTSG EDKILADFIH LHGEGRWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SSDEQDLIIR LHRLLGNRQA TLSSHLFPPF FNLLRAFLSE ASFSAWSLIA  120
GRLPGRTDNE IKNYWNTTLR KKTHVNQTAS TSASPPPKSS RTKQCSTDKK RKKKDKKNVE  180
STHQNVASSQ VTHHSLITPP KSDHHPTLMD TTSPEPLAAQ NLMPKQDSSS NGQSLDLVPD  240
VDSSDMGFKE LLDFDFSGLL DTNNDDQRDS EIETTSLISL NENPLMDVLV DEFWSAVEEP  300
NLAACNPFNQ YFASESDFLG DWLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-201214325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKRKK
2168176KKRKKKDKK
3170175RKKKDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2985090.0AB298509.1 Daucus carota DcMYB5 mRNA for transcription factor DcMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216602.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A161X5C80.0A0A161X5C8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-56myb domain protein 5