PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_024652

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 346aa MW: 37255.9 Da PI: 4.665

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_024652	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	79	1.3e-24	52	127	9	82
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssa 82 ++ kv gRd RvR++ +ca r+F+L++eL + + ++tieWLl+qa+p+i+++tgt++ +a++ sss+ DCAR_024652 52 QDRQPKVHGRDCRVRIPTLCATRIFQLTRELCHRTHGETIEWLLRQAEPSIIAATGTGTVPAQSIsclygV---ASSST 127 688899***************************************************88888444334321...11111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.369	51	105	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-22	52	137	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MTISMAISSP SRSQSTSARK HTPLSPRPTT SFKASMPQNI SLVSTTTNNI AQDRQPKVHG 60 RDCRVRIPTL CATRIFQLTR ELCHRTHGET IEWLLRQAEP SIIAATGTGT VPAQSISCLY 120 GVASSSTSVF SPSSSTTVAP NVDPSRIEVN HPMNPPVTMM SDVYPPMMQN YQHVEGLEAN 180 LPPTSSTTMP LPIAYHPESF DMQGAERVVL NAPMNSSAMM VPDVISPRMH NAQPVNDVEI 240 NIPLNQSAME VPNVYPQEFP TFLHAGGDGA NPDSGGSTTM MFPFVFPPEV WEEVERNDPL 300 SSSAALDLNV VPPEMQNLAQ SDGVEVDQFA SSSTSVVPPT GDDAI*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MTISMAISSP SRSQSTSARK HTPLSPRPTT SFKASMPQNI SLVSTTTNNI AQDRQPKVHG  60
RDCRVRIPTL CATRIFQLTR ELCHRTHGET IEWLLRQAEP SIIAATGTGT VPAQSISCLY  120
GVASSSTSVF SPSSSTTVAP NVDPSRIEVN HPMNPPVTMM SDVYPPMMQN YQHVEGLEAN  180
LPPTSSTTMP LPIAYHPESF DMQGAERVVL NAPMNSSAMM VPDVISPRMH NAQPVNDVEI  240
NIPLNQSAME VPNVYPQEFP TFLHAGGDGA NPDSGGSTTM MFPFVFPPEV WEEVERNDPL  300
SSSAALDLNV VPPEMQNLAQ SDGVEVDQFA SSSTSVVPPT GDDAI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217164.1	0.0	PREDICTED: transcription factor PCF2-like
TrEMBL	A0A164TH76	0.0	A0A164TH76_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_024652