PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024639
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 466aa    MW: 51487.3 Da    PI: 6.0556
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024639genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-072462537
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  C++++++ ++l+C+ ++  lC  C ++ H+       H
  DCAR_024639 24 ACDHCNQETAILYCRADSAKLCVACDQHVHSAnplslkH 62
                 6***************************99655555555 PP
2zf-B_box23.41.2e-0765106341
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41 
                   ++C+++ ++++  +C +++ +lC +C +  H++   H++++
  DCAR_024639  65 SQICDNCASQPVAVHCVSDNLMLCIECDSDAHSSvtnHRRES 106
                  579*****************************8799999887 PP
3CCT661e-22417461145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  R++a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e
  DCAR_024639 417 RDNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 461
                  899***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2962067IPR000315B-box-type zinc finger
SMARTSM003362.2E-112067IPR000315B-box-type zinc finger
CDDcd000211.43E-72355No hitNo description
PfamPF006432.1E-52464IPR000315B-box-type zinc finger
PROSITE profilePS5011910.02563107IPR000315B-box-type zinc finger
PfamPF006433.0E-566106IPR000315B-box-type zinc finger
CDDcd000211.35E-467107No hitNo description
SMARTSM003360.2168107IPR000315B-box-type zinc finger
PfamPF062031.4E-16417459IPR010402CCT domain
PROSITE profilePS5101715.031417459IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAAGGDDEAA EERRLIRRRE MGVACDHCNQ ETAILYCRAD SAKLCVACDQ HVHSANPLSL  60
KHIRSQICDN CASQPVAVHC VSDNLMLCIE CDSDAHSSVT NHRRESVQGF SGCPAPAQLA  120
AHLGHDLMKL VHCDVNIGVI KGFQCDDEEG GDDQFMVPSS SLFGQVYRKG RGESSSAGLI  180
GGNQKHAVLK QLVHLFHTQQ QQQQQQQDGD EHFQIRQQEE DAQERRRGFM DSVDGDDDKD  240
AHSLLLAQSL TPQQQLLPFT SLLMQQQVST STSTGQLDVM NEVDQGGFEQ GESGQMLWNT  300
HPSDQGTQIW DFNLGCLRGS GPLDLGEGAN DAGFTVRSYS ELLTEASLDD TKGIRELYGM  360
NSSATLENLV TFKNDRNNPA AGPTSCESNN LPMQMLRCEN TAPATIKTDL QLMAKNRDNA  420
MLRYKEKKKT RRYDKHIRYE SRKARADTRK RVKGRFVKAS EAPGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219330.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15 isoform X1
TrEMBLA0A164TGX60.0A0A164TGX6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-42B-box type zinc finger protein with CCT domain