PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_024477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | G2-like | ||||||||
Protein Properties | Length: 229aa MW: 24979.5 Da PI: 8.2099 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 34.6 | 4.2e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl DCAR_024477 1 MRTMGVKGLTLYHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 8.1E-27 | 66 | 113 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE FTENSKDASC IAESQDTGSS TSASSRMMAQ 60 DLKDGFQVTE ALRVQMEVQR RLHDQLEVQR RLQLRIEAQG RYLQTILEKA CKALEGQTVA 120 SVGLEAAREE LSELAIKVAN DCQQVITVPS LSEIAASLES KNPLGVPGKF GDCSVDSSLT 180 SIGSPLSPMG MGSQAAALKK RTRPFSNGDL SPLDNNLRQV EWMMSNIS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017219687.1 | 1e-166 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q8LAJ7 | 8e-87 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A161X4G6 | 1e-167 | A0A161X4G6_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0001s32200.1 | 1e-118 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3791 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 9e-69 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_024477 |
Publications ? help Back to Top | |||
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