PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_024472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 370aa MW: 41855 Da PI: 6.675 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 204 | 252 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g DCAR_024472 204 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAVAYDTAAYLLRG 252 8******9.**********955...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.35E-32 | 202 | 262 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-22 | 203 | 261 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.379 | 203 | 260 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-37 | 203 | 266 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 203 | 261 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-12 | 204 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 204 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 226 | 242 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDQYFPKVET FLPKELMLPS YFQEIVQGSH SFTDPNVWNI LHSNSESISP VDDKSCVATL 60 STYNIPDLAR TNFPEDSSCI PLNFLDFFPR LSQPTHDHVS EPSLISSSVD EKFPNLSLFL 120 NDPSILNVSK QPSESEIFEC HKNHLVQTSQ HSDQATSECL RMNQSLLTSY APKGLSDYWL 180 SATKTQPMKN SGRRIQKPSY TKLFRGVRQR HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA 240 VAYDTAAYLL RGDYAHLNFP EQKHQLKANS MNGSTAALLE AKLQTMSGNN KPSEVRKATS 300 KKTCEESIET KEWQVDELKG KKGLVSNEKN RRPQQVFCAE NVNGVDQLSR MPSLDMDTIW 360 DALLVSSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 202 | 260 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 202 | 270 | 4 | 68 | ATERF1 |
3gcc_A | 4e-20 | 202 | 270 | 4 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017218170.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A164TC88 | 0.0 | A0A164TC88_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.011G157500.1 | 1e-95 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-66 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_024472 |