PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024351
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 322aa    MW: 37225.1 Da    PI: 9.4092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024351genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-112633174197
                  TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  41 esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++g ++W++++  +k+ +++ l +GW+   k+ +Lk+gD++vF+  g s+f+++++vf
  DCAR_024351 263 TDGlNKWKIEV--KKRNNMTELHRGWEVLWKDMKLKAGDTCVFESLG-SNFKFNLRVF 317
                  44469******..99999999***********************666.8888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2116205IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-10223317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-9224317IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014225320IPR003340B3 DNA binding domain
CDDcd100172.06E-7260317No hitNo description
PfamPF023621.1E-8264317IPR003340B3 DNA binding domain
PROSITE profilePS508638.896268320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTIEDFQGLK FFKVAMPSTF MTGEMTFPRR FSNYLNQIPS RGKFVLRDGH EWEITICKER  60
KSVLGLKPIL KFFECNKGAF FFMQYKGGGQ FMCDVFPLIR GSPQETVEVD FQGRYIMKIV  120
TSNGHNFDDV VLPPSVLAQF KSHIPNTLRL RLKNGVEYVA KYEKEKRAIS GFKQLQQSIE  180
IEFGDTIVLS CDIYPTYHVT LFGTDGIEKN PASCEMNEDL AVKTFEITVR PSHLQKYSQG  240
VLVPAKYQNI TASWQAFQFI EVTDGLNKWK IEVKKRNNMT ELHRGWEVLW KDMKLKAGDT  300
CVFESLGSNF KFNLRVFYRI R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164T8Z50.0A0A164T8Z5_DAUCS; Uncharacterized protein