PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024327
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 350aa    MW: 40878 Da    PI: 7.4709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024327genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-11249346199
                  EEEE-..-HHHHTT.-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksg.rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+ + +ps++l+++ r++++ +f  ++ ++ ++s  ++++ + + sW+++++  + s+r+++ +GW +F ++ +L++gD + F+ +++s  +++v ++
  DCAR_024327 249 FKVQVMPSHMLAHCpRVTVSVQFK-RITNEWKNSDNISIY-KGNLSWKFEIKKYRASNRTTIYGGWIQFRDDMQLNVGDLCYFRWINESYHHFRVEII 344
                  667788889988853667777774.563333344455544.5789******99999999*************************99887777799888 PP

                  -S CS
           B3  98 rk 99 
                  r+
  DCAR_024327 345 RA 346
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-10799IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-88100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-11248345IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-10249346IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-9249345No hitNo description
SMARTSM010197.5E-5249347IPR003340B3 DNA binding domain
PROSITE profilePS508639.53250347IPR003340B3 DNA binding domain
PfamPF023621.1E-8251346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNFPKFVPDF FKYLTCEDCS SMYMEIPQKF CNMQQNTLQG NWILNIRNGY TMHVTYDHQN  60
LRLEGMSDLF TDFQLVDGEV LIFQFVDGTN FNVYIMCEDG SEMEYPSVLH ASQLLSPNPV  120
SVSENKEGQK FLKFISNADP TFDEVVLLIA FWRKFGAKIP EWFAYVLKNH FRFGGHFEFT  180
KRKQSGLKKI CEGLKLSKFE KFELLVFTYD SGRLFTLTLF DGSSVEVCLD VQAITLGTLF  240
LTLRYPCAFK VQVMPSHMLA HCPRVTVSVQ FKRITNEWKN SDNISIYKGN LSWKFEIKKY  300
RASNRTTIYG GWIQFRDDMQ LNVGDLCYFR WINESYHHFR VEIIRAASD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161X4350.0A0A161X435_DAUCS; Uncharacterized protein