PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024245
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 139aa    MW: 15538 Da    PI: 8.968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024245genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-212071256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +l+g+
  DCAR_024245 20 KHRGVRRRP-WGKFAAEIRDPSRNG--QRLWLGTFETAEEAARAYDKAAFSLRGH 71
                 79*******.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-292079No hitNo description
SuperFamilySSF541711.24E-232079IPR016177DNA-binding domain
SMARTSM003807.9E-392084IPR001471AP2/ERF domain
PfamPF008471.4E-142071IPR001471AP2/ERF domain
PROSITE profilePS5103224.8562078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-322180IPR001471AP2/ERF domain
PRINTSPR003671.0E-102132IPR001471AP2/ERF domain
PRINTSPR003671.0E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MESSRGGKNK AGGAAKEEVK HRGVRRRPWG KFAAEIRDPS RNGQRLWLGT FETAEEAARA  60
YDKAAFSLRG HSAILNFPNE YYSQLADCRY QSSSTTNNYG SSSSSGNNQK QVIELEYLDD  120
SVLEELLESD EQKKLNKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-36131227114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217071.12e-98PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A164T6915e-97A0A164T691_DAUCS; Uncharacterized protein
STRINGXP_009590142.18e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]