PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024225
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 530aa    MW: 61261.5 Da    PI: 7.531
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024225genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-11437527196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+  l++s+v ++g  v+  ++++++ +k ++s+ +     +g++W+v +   ++ +++ ++ GW++F  +n+L+ g  +vF+++++++f   v +
  DCAR_024225 437 FEVDLLKSHVDQNGHGVFLPRYLTHIFKKWNKSTLIN-LVMKGKTWRVAV--LRRNKTCRFGVGWNSFTLDNKLRIGQKLVFSFVEDNTF--QVNI 527
                  5666788999999655555566657766666665555.5569********..555555669**********************9988777..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-523116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-526116IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01329118IPR003340B3 DNA binding domain
SMARTSM010190.89175270IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-7184272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-5216272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.6219270IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-7284375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-12437527IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0024437526IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-14437528IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561438529IPR003340B3 DNA binding domain
PfamPF023626.2E-9438527IPR003340B3 DNA binding domain
CDDcd100178.84E-7441527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSSSSSRRIA SACAMGNLQM EKSTNDLSFV CNTNNSKLKK GILVLSNAMA RNVGKFLYGP  60
VGLHLPDGAV WLARYNRELK IIEGLEELIK QYNVKNFHLL VFKYYGGTEF VLEIFNQYAV  120
EICYSPRGDN LGGNVVCDND SSLHYETTMD VTEYEKDKMH ACFSLNAYTT FTAEYVLVIK  180
DEHLIQTDWT MVLSRDACAE LDLDAKIEWL EFGFKKFMWR IDLKWEDGNL FFDRQWNTFA  240
KAGKLAVGDK LMLMRDKHWQ IFEVAVFERD ACALFNKFVD KQKGQPKWFK IMNWESAVIG  300
DVEVPFLFAK QYSHKLKEDV SLFLPDGGKF HAYFSIEGNL LYGLKDLMRT YAVKEQYVMF  360
FEFVGLSSFY VTIYNEEGED LFNKLPDKLM LRTLLKGIEE TEKLDGLNYG TAGHCNADDC  420
TNEHKRKKFR ADLLTEFEVD LLKSHVDQNG HGVFLPRYLT HIFKKWNKST LINLVMKGKT  480
WRVAVLRRNK TCRFGVGWNS FTLDNKLRIG QKLVFSFVED NTFQVNIVS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164T5R30.0A0A164T5R3_DAUCS; Uncharacterized protein