PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024117
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 490aa    MW: 53492.4 Da    PI: 5.5923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024117genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.8e-09294341455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  DCAR_024117 294 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 341
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-17288360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-11288345No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17290358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6294341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MERDKIWSSL QFGMEIQANE LNSTSEQIPS CYFNPNYDNS VDQSDPFESA LSSIVSSPAT  60
SNLGLQAKNG DQQNIVLREL IGRLGSICNS GDLYNANNST NTSCYNTPLN SPPRLNLSVM  120
DHQIRAGNLP FSPDPGFAER AAKFSCFGGG SGGKLGQVGG SQMGIQESKN GFSSEGNMKV  180
VSRSSSLEKC EVGAESMEES SVSEQIPGGE IGLKGQKDGN GKKRKAIPRG KAKEIVSGPS  240
VKEDKVSDEN DESKAKRSKA DEGNQKQCKD NSKPPEPPKD YIHVRARRGQ ATDSHSLAER  300
VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQSL QQQVEFLSMK LSTVNPRMDF  360
NMEDILSKDI FQSCASLPQN IYPVDASAQT FPYAFQSQQG SNLQSYMMPN GTKSQSLMNS  420
LTATIRRNPG TQQPPNDGYN TGVASQIPSY WDDDLQNVVQ MGFGQNQQQN FYALPNAASD  480
ATNHMKVEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215224QKDGNGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219726.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A161X3I00.0A0A161X3I0_DAUCS; Uncharacterized protein
STRINGVIT_05s0029g00390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-87bHLH family protein