PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024045
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 367aa    MW: 40604.4 Da    PI: 6.7341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024045genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-143782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++ Ed +l + v  +G ++W++Ia+ ++ gR++k+c++rw + 
      DCAR_024045 37 KGPWSENEDAILSHIVGSFGARNWSLIAKGIP-GRSGKSCRLRWCNQ 82
                     79******************************.***********985 PP
2Myb_DNA-binding582.1e-1889133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd l+++a+  +G++ W++Iar ++ gRt++ +k++w++ 
      DCAR_024045  89 RKPFTDEEDRLILQAHSIHGNK-WASIARLLP-GRTDNAIKNHWNST 133
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7163283IPR017930Myb domain
SuperFamilySSF466891.97E-2935130IPR009057Homeodomain-like
SMARTSM007177.5E-123685IPR001005SANT/Myb domain
PfamPF002492.7E-143782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-243890IPR009057Homeodomain-like
CDDcd001675.33E-113981No hitNo description
PROSITE profilePS5129426.81284138IPR017930Myb domain
SMARTSM007171.0E-1788136IPR001005SANT/Myb domain
PfamPF002494.6E-1689133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2391137IPR009057Homeodomain-like
CDDcd001673.84E-1391134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMDNVPEMRD VVGVDEEDDT GEEESGESIG SKKQRVKGPW SENEDAILSH IVGSFGARNW  60
SLIAKGIPGR SGKSCRLRWC NQLHPALKRK PFTDEEDRLI LQAHSIHGNK WASIARLLPG  120
RTDNAIKNHW NSTLRRRGIE LGKSMFERGN WLEDASGDES KVSSEETLSC GDVNSSKSLE  180
GKNVNSLETD GKSADDVQTE YQLCNEARYP RTVFQPVPRI SAFSIYNPLD GPEPLVQHRR  240
VTCSQKVILP PKPDAVIGKL LEGSYGERLV PRQCGYGCCG TSTKKMSKSS FLGPEFSDYE  300
EPISFPSHEL AGLAAEISNI AWLKSGLDNS NIKAPDHESG WSMISRGYHV QRGHIDKSKN  360
NVHSQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-38361376107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216565.10.0PREDICTED: transcription factor GAMYB
TrEMBLA0A164T0X20.0A0A164T0X2_DAUCS; Uncharacterized protein
STRINGXP_010101850.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-92myb domain protein 1