PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023976
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 897aa    MW: 98501.9 Da    PI: 6.7688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023976genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18329429199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l+ sd+++ grlvlpk +ae++   ++++e++ ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l++
  DCAR_023976 329 FEKILSASDAGRIGRLVLPKACAEAYfpPISQPEGIPVRIQDVKGEEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLM 424
                  99**************************666778899***************9989999999***9.********************876.8888888 PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +++++
  DCAR_023976 425 GFRKA 429
                  88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-28321429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19326428IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-22327428No hitNo description
PfamPF023621.0E-15329429IPR003340B3 DNA binding domain
SMARTSM010191.6E-20329430IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955329430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MGSKVCMNGL CGATFGDGKR GWPLRSGGFA VLCHSCWTLY EQLAFCDMFH SDDSGWRECI  60
SCGKRLHCGC VASSSLLEIL DSSGVICIRC AKGSGDQPKG FESPTGFGTS VEKYVGETHF  120
ASTDNQINVD CIHGINLKQF NNLADGDGPK QFLPSQDGNI VGSHCQMKQE GSIPPSADTG  180
ITCFSNFGRL SAGSSYDAKT KVCEGKEYSD VKDIYGSAVQ TNLTISLATP SLIQHSSPTA  240
VCEVVKSTKT VSSFQSESRT SHVLPKASQP DVTERLDPNA NMISPIRVAR PPVEGRIKNQ  300
LLPRYWPRIT EQELQKISGD SNSTIIPLFE KILSASDAGR IGRLVLPKAC AEAYFPPISQ  360
PEGIPVRIQD VKGEEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG  420
KLLMGFRKAS NNLMQDTHFS GKHTGSFASE PFLSGVIENL PAMSGYSGLL QSMSGGTDPH  480
LKVFSKNLSS SSGDVIWHVT DKPGGKRIID SLPPTLLAPE KKRSRNIGLK SKRLLIENQD  540
ALELKLTWEE VQEMLQPPAS VRPTTVTVED HEFEEYEGPP VLGKRSIFTV RSTGEQEQWT  600
TCDGCSKWRR CSCSAPDELS PWELEQLFKL NNDFKRRRIT VFDQMSTHNH DSNFPGVLAS  660
SSVQGEVTDL GATAVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK  720
TLMLRKKKRQ SDREAEIAQR NQFLWGPKEE VEVDSTSQGR RLLNLSENGS RSGSEPQAYD  780
ERNNQVDRAI NANTDKLDLN FQPNSGEDLP IKSTQVSMIS LVQVATRPLE MYLKQNGLTS  840
LIPEQQTSSG SHVPPQDITE SEGHPHQDQS LAQEDPPGSD DKVSEAGQTG TNLDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-663074312126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1634638KRRRI
2715726KRRFKTLMLRKK
3715728KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218546.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A161ZIU80.0A0A161ZIU8_DAUCS; Uncharacterized protein
STRINGEOY044560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]