PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023921

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 985aa MW: 109088 Da PI: 5.2533

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023921	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.9	2e-28	589	639	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e ++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ DCAR_023921 589 ERNVSLAVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 639 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	572	659	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-26	591	639	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-19	877	967	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-21	882	964	No hit	No description
SMART	SM00666	6.0E-16	885	967	IPR000270	PB1 domain
PROSITE profile	PS51745	17.961	885	960	IPR000270	PB1 domain
Pfam	PF00564	2.9E-13	886	964	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MADPFSSKER DVNWDSPRTE MNSTDGKTSY SSTEDPHSNF EDMMNFDTYA GWCTSPSTSD 60 KMPESYSLLP LAKDCMISGP LSFTQDSFES FCVIDNDVRS LVRAGETMMF DQTDPEFDFP 120 LDFDDKDDGH AINNSHFCQQ NNTMEIKNCI IARPFPPPLE ERMIKALSLF MESSGGGILA 180 QLWVPVKDGD QLKLSTCEQP YLLDRMLAGY REISRRFTFP AEVEPGSSLG LPGRVYASKI 240 PEWTSNVGYY SKKEYLRVQH ALENEVRGLV AIPIFSGNPR EMSCSAVLEL VYLKEKANFD 300 LEMENVCHAL QAVDLRSTAP PRFSPRFLSN NHRAALAEIT DVVRAVCHSY VLPLALTWIP 360 CTYDNGGGED IYSIRVRGDK TKSGEKCILC IEESACYVNE RETQGFVHAC AEHYLEEGQG 420 IAGRALQSNH PFFSTDVREY DITDYPLVHH ARKFGLNAAV AIRIRSTYTQ NDDYIIEFFL 480 PRTMTGNSEL LLNNLSNTMQ KICRSLRRVS EAELLEQSGA LPGIKKGLVT KSPTGTFSSR 540 SNQHELINSN ITCGDQVHKS THVGMETDGS AQQATSSKRV LEKKRSTAER NVSLAVLQQY 600 FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL NSVEGVEGGL 660 KIDPSTGNVV TSGSTFENFG DFGASKNFLF TNKSEPECYE MAENMSMARP SSCSNEKNDV 720 KVEHESGANG NQVNSCALQN WKRENNSSIM FSEWLNNSDV ADPIGKLINP GIGYGGGSDS 780 SGSYFSKEDS KICGLNSGDM ILEKYDSLLK CHSSSSIAVA NEMYTGARVS STRDDGASLA 840 QVNQPTTSSM TDSSNASTTH GNSSSSPDIG EPKGSKTPIC EANSRITIKA TFKEDTIRFK 900 FDPYLGCFQL YEEIAKRFKL QIGTFQLKYM DDEKEWVIMA NESDLLECLE ILDFMGTRNV 960 KFQVCDVVFG MGSSSSSNFV TGGL*

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MADPFSSKER DVNWDSPRTE MNSTDGKTSY SSTEDPHSNF EDMMNFDTYA GWCTSPSTSD  60
KMPESYSLLP LAKDCMISGP LSFTQDSFES FCVIDNDVRS LVRAGETMMF DQTDPEFDFP  120
LDFDDKDDGH AINNSHFCQQ NNTMEIKNCI IARPFPPPLE ERMIKALSLF MESSGGGILA  180
QLWVPVKDGD QLKLSTCEQP YLLDRMLAGY REISRRFTFP AEVEPGSSLG LPGRVYASKI  240
PEWTSNVGYY SKKEYLRVQH ALENEVRGLV AIPIFSGNPR EMSCSAVLEL VYLKEKANFD  300
LEMENVCHAL QAVDLRSTAP PRFSPRFLSN NHRAALAEIT DVVRAVCHSY VLPLALTWIP  360
CTYDNGGGED IYSIRVRGDK TKSGEKCILC IEESACYVNE RETQGFVHAC AEHYLEEGQG  420
IAGRALQSNH PFFSTDVREY DITDYPLVHH ARKFGLNAAV AIRIRSTYTQ NDDYIIEFFL  480
PRTMTGNSEL LLNNLSNTMQ KICRSLRRVS EAELLEQSGA LPGIKKGLVT KSPTGTFSSR  540
SNQHELINSN ITCGDQVHKS THVGMETDGS AQQATSSKRV LEKKRSTAER NVSLAVLQQY  600
FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL NSVEGVEGGL  660
KIDPSTGNVV TSGSTFENFG DFGASKNFLF TNKSEPECYE MAENMSMARP SSCSNEKNDV  720
KVEHESGANG NQVNSCALQN WKRENNSSIM FSEWLNNSDV ADPIGKLINP GIGYGGGSDS  780
SGSYFSKEDS KICGLNSGDM ILEKYDSLLK CHSSSSIAVA NEMYTGARVS STRDDGASLA  840
QVNQPTTSSM TDSSNASTTH GNSSSSPDIG EPKGSKTPIC EANSRITIKA TFKEDTIRFK  900
FDPYLGCFQL YEEIAKRFKL QIGTFQLKYM DDEKEWVIMA NESDLLECLE ILDFMGTRNV  960
KFQVCDVVFG MGSSSSSNFV TGGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017219315.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017219316.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A161WR29	0.0	A0A161WR29_DAUCS; Uncharacterized protein
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_023921