PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023899
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 673aa    MW: 73826.8 Da    PI: 6.6641
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023899genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.3e-14257316155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  DCAR_023899 257 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 316
                  57*******************666664478446**********99*************98 PP
2AP246.87.6e-15359410155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  DCAR_023899 359 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 410
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-11257316IPR001471AP2/ERF domain
CDDcd000184.08E-17257316No hitNo description
SuperFamilySSF541711.83E-16257325IPR016177DNA-binding domain
SMARTSM003802.9E-28258330IPR001471AP2/ERF domain
PROSITE profilePS5103218.861258324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-14258324IPR001471AP2/ERF domain
PRINTSPR003676.9E-6259270IPR001471AP2/ERF domain
CDDcd000183.96E-25359420No hitNo description
PfamPF008479.4E-10359410IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17359419IPR016177DNA-binding domain
SMARTSM003802.7E-33360424IPR001471AP2/ERF domain
PROSITE profilePS5103219.177360418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18360418IPR001471AP2/ERF domain
PRINTSPR003676.9E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MANSMNNCLG FSLSSDEHFQ QHPCQDFNSD QISGTNISTT DCFDGGSTLP SLNLPAPPFG  60
LLESFNTNNA LQEWNSGTNY KQSSSSELSM IMGSSSCHSH HSGPKLENFF GHSYQDHQND  120
HQQHNDHAHH YMFQNCSTQL QAEAVAAPLS TDNDKTIGLS MIKNWLRSNS NPSDNINVSQ  180
SNGDLVMASG NGTLTTGAQT LSLSMSTGSM AGASSGGGGE ILSSDNKRQM EGSNSQNGVV  240
EAVVPRKSID TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QVYLGGYDKE  300
DKAARAYDLA ALKYWGTTTT TNFPITTYEK EVDDMKHMTR QEFIASLRRK SSGFSRGASI  360
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN  420
RYDVKNILES STLPIGGAAK RLKEAEQAQM TLEALRTEDS SSLTSHLTNG MQTYGSHHNN  480
WPTIAFQQAK SPIAMHYPYG DHQRLWCKQE VPDVDSSSQS YQGFHQLQLG SSNHNFFQPS  540
VLHNLMNLDS SSMEHSSGSN NAVMYGNGTG YGIPMGTIIP QEAHHPHLGL GESSEGTYDN  600
PYGATDPYSS RSLYYLSQHS ENGGSVKETS VYDQGSACNN WIPTAVPTAL VQKTNSLGNC  660
HGAGSFTAWN DT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216908.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A164SWP20.0A0A164SWP2_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-124AP2 family protein