PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023659
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 418aa    MW: 47531.9 Da    PI: 4.8064
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023659genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.3e-081659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C  + H        H++v
  DCAR_023659 16 ARACDGCVKKRARWYCAADDAFLCQACDGSVHAAnplaqrHERV 59
                 578***************************99657777778776 PP
2CCT68.22.2e-23367410144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  DCAR_023659 367 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRIKGRFVKRA 410
                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.6E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5521461IPR000315B-box-type zinc finger
PfamPF006432.4E-61659IPR000315B-box-type zinc finger
CDDcd000211.15E-91761No hitNo description
PfamPF062034.9E-18367409IPR010402CCT domain
PROSITE profilePS5101716.192367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MESESSIANA VGGKTARACD GCVKKRARWY CAADDAFLCQ ACDGSVHAAN PLAQRHERVR  60
LKTASMTQLS LEIPSWHYGF TRKPRTPRGK HHHRHKSEKL TTNPVHYEPE IVPNNENLSE  120
ENDEQEQLIY RVPIFDPFAA EMSLSDTSTE SVTLRAGDDD GEKHKVGFYQ SDMDLEEFAA  180
DVENLLCKGL DDQESFDMET LGFFNSRGKD SVESPSTWCA GTVIKFEEAD EIKDSAIVNY  240
QIEAEIDMTK ETFELNFDDY DTPENNFEED YEKAGGFGNV IDQLKEECEA METNVEEKKS  300
KILLALDYEG VLAAWPEQKS AWMTGDRPQL EDSTCWPDCM GECGNVHDNY ASRYGEMGGL  360
RMLDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RIKGRFVKRA NFLAAIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377393RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219277.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A164SRF30.0A0A164SRF3_DAUCS; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-98B-box type zinc finger protein with CCT domain