PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023650
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 266aa    MW: 30416.9 Da    PI: 6.6797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023650genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
      DCAR_023650 18 RGPWTFEEDSKLIRYITCHGEGRWNLLANSSGLRRTGKSCRLRWLNYL 65
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      DCAR_023650  71 RGNLTPQEQLLILELHSKWGNR-WSKIAAHLP-GRTDNEIKNYWRT 114
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7681365IPR017930Myb domain
SuperFamilySSF466892.32E-3016112IPR009057Homeodomain-like
SMARTSM007173.9E-131767IPR001005SANT/Myb domain
PfamPF002492.0E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221972IPR009057Homeodomain-like
CDDcd001672.60E-92065No hitNo description
PROSITE profilePS5129425.60766120IPR017930Myb domain
SMARTSM007173.2E-1570118IPR001005SANT/Myb domain
PfamPF002491.4E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2473119IPR009057Homeodomain-like
CDDcd001671.00E-1075114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MPANELSSCG EEGSELRRGP WTFEEDSKLI RYITCHGEGR WNLLANSSGL RRTGKSCRLR  60
WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAAHL PGRTDNEIKN YWRTRVQKQA  120
RQLKINSNSK KFIEALQHFW MPRLLEKMEQ NSAQPSLLSS PSTKETENSE SGSKLTNSIA  180
IGSSSQNSMA ILEQTKSSDY ENPLENNSYH VDSTGFAKES FRELDISDLE SNEFSFSDCQ  240
MAKVDWTNDI AGAFWDIGES WEFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151204108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215177.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G71e-79MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A164SRA20.0A0A164SRA2_DAUCS; Uncharacterized protein
STRINGSolyc05g009230.1.13e-93(Solanum lycopersicum)
STRINGXP_009626235.13e-93(Nicotiana tomentosiformis)
STRINGXP_006448450.17e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-78myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]