PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 21606.7 Da PI: 9.6922 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 31 | 85 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k DCAR_023600 31 RKKLRLTKQQSRLLEESFRQNHTLNPKQKETLAMELKLKPRQVEVWFQNRRARSK 85 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8.2e-38 | 31 | 119 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLEesF+++++L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr + DCAR_023600 31 RKKLRLTKQQSRLLEESFRQNHTLNPKQKETLAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQKEVEELR-A 119 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 16 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 18 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-17 | 29 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.13E-16 | 30 | 88 | No hit | No description |
Pfam | PF00046 | 4.9E-17 | 31 | 85 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.5E-21 | 87 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.2E-10 | 87 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRDLDINQVP SEEELIEEDD QNPNHDGAPP RKKLRLTKQQ SRLLEESFRQ NHTLNPKQKE 60 TLAMELKLKP RQVEVWFQNR RARSKLKQTE MECEYLKRWF GSLSEQNRRL QKEVEELRAM 120 KVAPPTVMTS HSSDPLLAST LTMCPQCERV TTTTAQPNAG PIRPSASKPS AMAAAKVPVI 180 HSRHSSPAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217587.1 | 1e-138 | PREDICTED: homeobox-leucine zipper protein HOX3 isoform X1 | ||||
Swissprot | Q0JKX1 | 3e-73 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-73 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A164SQ76 | 1e-136 | A0A164SQ76_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_022041m | 6e-89 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-70 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023600 |