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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_023538 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
BBR-BPC |
Protein Properties |
Length: 357aa MW: 39887.3 Da PI: 10.1957 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_023538 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 272.4 | 2.3e-83 | 1 | 356 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..................................... 57
mdd g + rn+ +y ++ + nl+l+l+ s+ er + re+ + l ++ +a+++
DCAR_023538 1 MDDGGLNLRNWNMYGQHYNKPGNLNLHLFPSL-ERHVQNpflgRESSVLLNHNGGAFHPSLskstahmdpgvnnwahprdryvqmisansglaafheh 97
88888877999999999777789999999999.56665568897777766666666643333444444455555555555888888888888887777 PP
GAGA_bind 58 ....................maflqrdkalaernka.lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklea 134
d+ +++ + + +++ +++++v++s ++ + + +q++s s ++ +p + s l++++++e+
DCAR_023538 98 pgahsmnmlqqqehsespkdARVCLEDMHVKQEGGSpVKKKKRTDVNMEPVSDSWVHRDRFVQQMVSANPSFAGFHE--HPPAH-SMHMLQHQQQSES 192
76666444444444433333333344444444332202233333344555555555555555555544444443333..22221.1122334444555 PP
GAGA_bind 135 lpieeaaeeak.ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
++i + ++k e ++ ++ +++ ++k +k++k+++ +k++ ++ + +r+k kks+++v+ng++lD s++P+PvC+CtG+++qCY+WG+GGWq
DCAR_023538 193 PKIGMEDVDVKkEIGEPV--KKRQSAAASKPRKPRKSPSIPKENGSSTG--HRVKPAKKSMNVVINGMDLDFSSIPIPVCTCTGTPQQCYRWGCGGWQ 286
555444333330333333..34445566777788887777777776666..79********************************************* PP
GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
SaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaa+ y+++n++DL+ hWA+HGtnkfvtir
DCAR_023538 287 SACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAADNYSFANAIDLRYHWARHGTNKFVTIR 356
*********************************************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MDDGGLNLRN WNMYGQHYNK PGNLNLHLFP SLERHVQNPF LGRESSVLLN HNGGAFHPSL 60 SKSTAHMDPG VNNWAHPRDR YVQMISANSG LAAFHEHPGA HSMNMLQQQE HSESPKDARV 120 CLEDMHVKQE GGSPVKKKKR TDVNMEPVSD SWVHRDRFVQ QMVSANPSFA GFHEHPPAHS 180 MHMLQHQQQS ESPKIGMEDV DVKKEIGEPV KKRQSAAASK PRKPRKSPSI PKENGSSTGH 240 RVKPAKKSMN VVINGMDLDF SSIPIPVCTC TGTPQQCYRW GCGGWQSACC TTTISMYPLP 300 MSTKRRGARI AGRKMSQGAF KKVLEKLAAD NYSFANAIDL RYHWARHGTN KFVTIR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |