PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023482
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 325aa    MW: 35357.4 Da    PI: 7.2367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023482genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-091255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d  + +a + +  +   +W++Ia+ ++ g++l+++++++ 
      DCAR_023482 12 WSREQDIMFENALATYSEDlsdRWEKIAADVP-GKSLEEVRDHYE 55
                     ********************************.**********96 PP
2Myb_DNA-binding45.41.8e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      DCAR_023482 122 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.007762IPR017884SANT domain
SMARTSM007171.7E-6860IPR001005SANT/Myb domain
SuperFamilySSF466895.94E-111066IPR009057Homeodomain-like
CDDcd001675.93E-81258No hitNo description
PfamPF002492.0E-61255IPR001005SANT/Myb domain
PROSITE profilePS5129417.792115171IPR017930Myb domain
SuperFamilySSF466893.29E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17119169IPR006447Myb domain, plants
SMARTSM007171.1E-11119169IPR001005SANT/Myb domain
PfamPF002492.5E-12122166IPR001005SANT/Myb domain
CDDcd001674.70E-11122167No hitNo description
Gene3DG3DSA:1.10.10.601.3E-11122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSGNESGDSS IWSREQDIMF ENALATYSED LSDRWEKIAA DVPGKSLEEV RDHYELLVDD  60
VNRIESGCVP LPRYNSSSSG SIGQAGNEGT GKKGGSFGNF NSESNHNGKA LKSEQERRKG  120
IAWTEEEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITNVNN GEMPVSPTPI TGQTNGSSAG GSSGKPIKQT PQLVAPGVMY GGTTIGQPVG  240
GSLVAGTPVN LSQPAHMGYS MIAPSGQLVP GAPVNMGPMA YPLPQTSTHR RELEWENERI  300
GMSIPRIKEW ENGRIGMSIP RINE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1612771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219915.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017219916.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017219917.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-111SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A164SMQ50.0A0A164SMQ5_DAUCS; Uncharacterized protein
STRINGXP_004513249.11e-142(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-114MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]