PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023305
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 281aa    MW: 31219.6 Da    PI: 5.6952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023305genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-2092140355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W++eIrdp++     r++lg++ t+eeAa+a+++a+k+++g
  DCAR_023305  92 YRGIRQRP-WGKWASEIRDPKK---GVRVWLGTYNTPEEAARAYDEAAKRIRG 140
                  9*******.**********954...4************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3291149IPR001471AP2/ERF domain
SMARTSM003808.3E-3891154IPR001471AP2/ERF domain
PROSITE profilePS5103223.73691148IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2291149IPR016177DNA-binding domain
PfamPF008474.6E-1492140IPR001471AP2/ERF domain
CDDcd000183.67E-3392149No hitNo description
PRINTSPR003674.3E-1192103IPR001471AP2/ERF domain
PRINTSPR003674.3E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MCGGAIISDF EPPIRTGRKV TSRDVWAKFE GKTRSDLFGW NSFDDTCPPF STLDDSFGEP  60
KQPHHIQIKE VSHEASGKPS QEGHKRTRKN AYRGIRQRPW GKWASEIRDP KKGVRVWLGT  120
YNTPEEAARA YDEAAKRIRG DKAKLNFPDP PAKKHCAGAP RAPPELTQSY PELSYSSTES  180
TQSYFNALTP TESTQSTFNA LSPAGSTQSE LGYDPAQCFG TFQPPNFSPA QMATPEEELE  240
FKEHITSLKS FLGLEQEVSQ MGFDSVDYWA MDDLDALLAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2192148663ATERF1
3gcc_A4e-2192148663ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215250.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
TrEMBLA0A164SJ470.0A0A164SJ47_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-49ethylene-responsive element binding protein