PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_023232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25560.8 Da PI: 6.939 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3.1e-18 | 19 | 65 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++ rqvtfskRr+g++ KA+EL+vL++ae a+i+ s+ ++++ + DCAR_023232 19 IIDEYSRQVTFSKRRTGLFNKASELCVLTGAETAIIVESPGNRVFAF 65 5567789**********************************999877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.876 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-25 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-24 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-20 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MSMPQKKTQG RKKIEIRKII DEYSRQVTFS KRRTGLFNKA SELCVLTGAE TAIIVESPGN 60 RVFAFGHPSV DAVVDKYLAG SSSVSSQDNL SVKQVNVNYL IAHNNFNLKY REIAKEIEEE 120 KNKDTNFRWQ ESFEDLGVEE LEKYIDSMEE LKDKLATRAN EVEMIRNSSS FDVNQSLKNE 180 GVDAFLVINQ NADCGGTQHY MGEKGMEKKV WNHKMSLYGN RCLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1c7u_A | 9e-16 | 10 | 77 | 1 | 68 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 9e-16 | 10 | 77 | 1 | 68 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256044.1 | 1e-166 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A164UV75 | 1e-166 | A0A164UV75_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-27 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_023232 |