PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023102

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 496aa MW: 56871.8 Da PI: 4.6184

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023102	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	284.4	3.2e-87	76	443	1	364
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl A+ v++++l + L++l +++ +gd++qR+aayf+ +L arl+ s y+ + ++t+ +ee+ a++ +++vsP+++f+h+ta DCAR_023102 76 LIHLLLISATSVDENKLDSSVESLSELFQNVCLSGDSIQRVAAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTELYKVSPYYQFAHFTA 169 689**************************************************99999888886....788889999*********** PP GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188 NqaI ea+e+e +++H+iDfd+s+G+QWp+L+q+L++++ +++ slRiT++g+ s+eel+et+ rL fA+ + ++ fef+ l l DCAR_023102 170 NQAIIEAFEKEegynnNALHVIDFDVSYGFQWPSLIQSLSDKTTNSHriSLRITAFGR----STEELHETETRLVCFAKGFrNLVFEFQGL----LRG 259 ******988888899*****************9995544459****....9************9758***8....778 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 ++++++ +++E+laVnlv++l +l s s ++++Lk v l+P v++veq+ ++n sFl+rf+e+l+y++a+fdsl+ lp +s er +E DCAR_023102 260 SSFSNIKRRNNETLAVNLVFHLNTLT--SFSK---ISDTLKSVHFLNPATVILVEQDGSRNPRSFLARFMESLHYFAAMFDSLDDCLPLDSAERLGIE 352 889****************998..3333...558******************************************************** PP GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk..sdgyrveee.sgslv.lgWkd 364 + lgrei+ + e++ ++ e++e+W+ r+e GF+ v+ls+k ++qaklll+ +++ + g+rv e+ +++++ lgW+d DCAR_023102 353 KYHLGREIKRFINFEKDVtNCMKYERMETWKGRMEGHGFEGVKLSSKSVMQAKLLLKirsqycpvQCDgeNGGFRVFERdENTAIsLGWQD 443 ***********98757899*******************************83333332223332234777654344455699998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.76	50	421	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-84	76	443	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MEATDHDEEF LNLTLAIDSN SSFDKKRKGM KTEEVLIEPK EECEGKILNL LQLREDMLKL 60 DHKRKGVAED GKGLHLIHLL LISATSVDEN KLDSSVESLS ELFQNVCLSG DSIQRVAAYF 120 ADGLVARLLT RKSPFYDMIM KEPTAEEEFL AFTELYKVSP YYQFAHFTAN QAIIEAFEKE 180 EGYNNNALHV IDFDVSYGFQ WPSLIQSLSD KTTNSHRISL RITAFGRSTE ELHETETRLV 240 CFAKGFRNLV FEFQGLLRGS SFSNIKRRNN ETLAVNLVFH LNTLTSFSKI SDTLKSVHFL 300 NPATVILVEQ DGSRNPRSFL ARFMESLHYF AAMFDSLDDC LPLDSAERLG IEKYHLGREI 360 KRFINFEKDV TNCMKYERME TWKGRMEGHG FEGVKLSSKS VMQAKLLLKI RSQYCPVQCD 420 GENGGFRVFE RDENTAISLG WQDSHPPGQS VAYFTEVFKD YEPADDDYED YEPEHDEPED 480 YGSEYDDLED EKPED*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MEATDHDEEF LNLTLAIDSN SSFDKKRKGM KTEEVLIEPK EECEGKILNL LQLREDMLKL  60
DHKRKGVAED GKGLHLIHLL LISATSVDEN KLDSSVESLS ELFQNVCLSG DSIQRVAAYF  120
ADGLVARLLT RKSPFYDMIM KEPTAEEEFL AFTELYKVSP YYQFAHFTAN QAIIEAFEKE  180
EGYNNNALHV IDFDVSYGFQ WPSLIQSLSD KTTNSHRISL RITAFGRSTE ELHETETRLV  240
CFAKGFRNLV FEFQGLLRGS SFSNIKRRNN ETLAVNLVFH LNTLTSFSKI SDTLKSVHFL  300
NPATVILVEQ DGSRNPRSFL ARFMESLHYF AAMFDSLDDC LPLDSAERLG IEKYHLGREI  360
KRFINFEKDV TNCMKYERME TWKGRMEGHG FEGVKLSSKS VMQAKLLLKI RSQYCPVQCD  420
GENGGFRVFE RDENTAISLG WQDSHPPGQS VAYFTEVFKD YEPADDDYED YEPEHDEPED  480
YGSEYDDLED EKPED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-45	84	443	27	369	Protein SCARECROW
5b3h_A	8e-45	84	443	26	368	Protein SCARECROW
5b3h_D	8e-45	84	443	26	368	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256072.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A164UY49	0.0	A0A164UY49_DAUCS; Uncharacterized protein
STRING	EMJ00209	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12354	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	1e-51	SCARECROW-like 21

Link Out ? help Back to Top
Phytozome	DCAR_023102