PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_023101

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 514aa MW: 57471.6 Da PI: 6.503

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_023101	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	266	287	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H DCAR_023101 266 FCLICGKGFKRDANLRMHMRGH 287 5*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.93E-5	263	290	No hit	No description
PROSITE profile	PS50157	11.552	265	292	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	265	287	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-5	267	316	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	267	287	IPR007087	Zinc finger, C2H2
SMART	SM00355	59	314	347	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	352	374	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MDLQKRLCGV ETWTKLPSST QLELQKKVPP DQHSFINFSS QGNVQKWNDP SIIDYSTRIG 60 EQFPEFVQPS QTQCTYPCNN DNQMNILGQL DGQMNGIRDA IRNCDWDPRV MLTNLSIMEQ 120 KIHQLQDLVH IIFGRRTEAM NGSEALAAQQ QQLINADLTS IIVQLISTAG SLLPSSKNTF 180 SSGNPFGNGL GQPGGIGYPS GPSGTVNNHV NKVEDHSDQI DLIVNNVEDH DLKDEEEVDE 240 GEHLPPGSYE ILQLEKEEIL APHTHFCLIC GKGFKRDANL RMHMRGHGDE YKTPAALAKP 300 HKEMSSEPSL VKRYSCPYIG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK SYTCSRCNTK 360 KFSVIADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHITL FQGHTPAIPL DENKGMVELS 420 DHGEANETPS KVARTDFDFS PAAFLNIMDA KGTADEDTRI FSPLDFDISS LSGFSDFPRP 480 PFEDSDNSLS FLIPSACNYP RGTERNPGSN NLK*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MDLQKRLCGV ETWTKLPSST QLELQKKVPP DQHSFINFSS QGNVQKWNDP SIIDYSTRIG  60
EQFPEFVQPS QTQCTYPCNN DNQMNILGQL DGQMNGIRDA IRNCDWDPRV MLTNLSIMEQ  120
KIHQLQDLVH IIFGRRTEAM NGSEALAAQQ QQLINADLTS IIVQLISTAG SLLPSSKNTF  180
SSGNPFGNGL GQPGGIGYPS GPSGTVNNHV NKVEDHSDQI DLIVNNVEDH DLKDEEEVDE  240
GEHLPPGSYE ILQLEKEEIL APHTHFCLIC GKGFKRDANL RMHMRGHGDE YKTPAALAKP  300
HKEMSSEPSL VKRYSCPYIG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK SYTCSRCNTK  360
KFSVIADLKT HEKHCGRDKW LCSCGTTFSR KDKLFGHITL FQGHTPAIPL DENKGMVELS  420
DHGEANETPS KVARTDFDFS PAAFLNIMDA KGTADEDTRI FSPLDFDISS LSGFSDFPRP  480
PFEDSDNSLS FLIPSACNYP RGTERNPGSN NLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254798.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q9C8N5	1e-175	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A164UY59	0.0	A0A164UY59_DAUCS; Uncharacterized protein
STRING	VIT_18s0072g00840.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4754	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-168	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_023101

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]