PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023095
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 1015aa    MW: 114711 Da    PI: 5.3135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023095genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13851246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw++
      DCAR_023095  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYQ 51
                     78*****************************.***********95 PP
2Myb_DNA-binding322.9e-1085127348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
      DCAR_023095  85 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 127
                      6*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.988257IPR017930Myb domain
SuperFamilySSF466891.29E-11451IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-14550IPR009057Homeodomain-like
SMARTSM007174.8E-11655IPR001005SANT/Myb domain
PfamPF002492.9E-11851IPR001005SANT/Myb domain
CDDcd001677.72E-111051No hitNo description
PROSITE profilePS5129415.08578131IPR017930Myb domain
SuperFamilySSF466895.46E-1181131IPR009057Homeodomain-like
SMARTSM007172.9E-1082129IPR001005SANT/Myb domain
CDDcd116597.75E-2784130No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1085128IPR009057Homeodomain-like
PfamPF139214.9E-986134No hitNo description
PfamPF118312.3E-56427679IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY QDFPAIVVSY  60
NCICAATLVY LNVNVLYGYR RLVTEWTREE DEKLLHLAKL MPTQWRTIAP IVGRTPSQCL  120
ERYEKLLDAA CAKDENYEPG DDPRKLRPGE IDPNPESKPA RPDPVDMDED EKEMLSEARA  180
RLANTRGKKA KRKAREKQLE EARRLASLQK RRELKAAGID NRHRKRKRKG IDYNAEIPFE  240
KKPPPGFYDV TDESRTVEQP KFPTTIEELE GEKRSDKEAR LRKQDAARNK IAQRQDAPAA  300
ILQANKLNDP EAVRKRPKMN LPTPQIPDHE LEHIAKIRLP ASNEELTEGS GATRALLADY  360
AHTPRQGATS LRTPQRTPAG KHDAIMMEAE NQARLRLSQT PLLGGENPEL HPSDFSGVTP  420
RKMEIQTPNV MMTPSVTPSP GGAGLTPRIG MTPTRDGPSY GMTPKGTPIR DELHINDEMD  480
MHDSAKLELR RQADLRRNLR SGLTSLPQPK NEYQIVVQPI PEDNEEPEEK MEEDMSDRIA  540
REKAEEEARM QALLKKRSKV LQRELPRPPS ASLELLKNSL LRADEGKSSF VPPTLIEQAD  600
EMVRKELVSL LEHDNIKYPI DEKVQKEKKK VTKRTTKGNS ALVPLIDQYE EDELKEADLL  660
IKEESQFLCM AMGHESESFD EFVEAHNTCV NDIMYFPTRN AYGLSSVAGN MEKVAALQDE  720
FENVRSRMDD DTKKAQRLEQ KIKLLTNGYQ HRATNLWSQV EATFKLMDDA GTELNCFQAL  780
RNQEQLAASH RVNTLWEEVQ KQKELEQTLQ KRYGNLLSEQ ERIQGMMNEF RAKAREENAA  840
KQHALELAEA AEKQHALELA EAAEKQHALE VAEGAEKQHA LELAEVEEKQ RAVELAEVVE  900
TQHGVVVAEM EEKQNAGELT EPESERQLPG MKSAEDHTPE LAKGEEEILG NQLSFEGNEA  960
VALSEAIDFA DAKDGESIQD GITVTTITTS VSQTVTTVTT SVSQTGTDEE VKQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028253800Cell division cycle 5-like protein
5xjc_L0.028253800Cell division cycle 5-like protein
5yzg_L0.028253800Cell division cycle 5-like protein
5z56_L0.028253800Cell division cycle 5-like protein
5z57_L0.028253800Cell division cycle 5-like protein
5z58_L0.028253800Cell division cycle 5-like protein
6ff4_L0.028253800Cell division cycle 5-like protein
6ff7_L0.028253800Cell division cycle 5-like protein
6icz_L0.028253800Cell division cycle 5-like protein
6id0_L0.028253800Cell division cycle 5-like protein
6id1_L0.028253800Cell division cycle 5-like protein
6qdv_O0.028253800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209228KRRELKAAGIDNRHRKRKRK
2223228RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258014.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A161ZPN30.0A0A161ZPN3_DAUCS; Uncharacterized protein
STRINGcassava4.1_000851m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]