PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023074
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 865aa    MW: 95070 Da    PI: 6.9908
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  DCAR_023074 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                 5679*****************************************************97 PP

2START177.86.5e-561613692205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++
  DCAR_023074 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 257
                  789*******************************************************.8888888888****************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ 
  DCAR_023074 258 LYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLTNTQNGPSmppVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVL 355
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++ +l+++++
  DCAR_023074 356 AQKTTMTALRQLRQ 369
                  *********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4831276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
CDDcd000869.78E-171777No hitNo description
SuperFamilySSF466895.99E-171780IPR009057Homeodomain-like
PfamPF000463.1E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181975IPR009057Homeodomain-like
CDDcd146861.24E-669108No hitNo description
PROSITE profilePS5084825.339151366IPR002913START domain
CDDcd088751.39E-77155371No hitNo description
Gene3DG3DSA:3.30.530.209.8E-24160367IPR023393START-like domain
SuperFamilySSF559618.24E-39160372No hitNo description
SMARTSM002343.0E-42160370IPR002913START domain
PfamPF018522.2E-53161369IPR002913START domain
PfamPF086701.0E-42727863IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MMSMSCKDGK GVMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYDNGYFRQH  120
TQTSGLPTKD TSCESVVTSG QHHMTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCPGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVME DGSLVVCERS LTNTQNGPSM  300
PPVQNFVRAE MLPSGYLIRP CDGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSTVLAQKTT  360
MTALRQLRQI AQEASQSSAA NWGQRPVALR ALSQRLSRGF NEALNGFTDE GWSLMGTEGM  420
DDVTILVNSS PDKLMGLNLS FNNGFTPVSN GVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADTNIDAYSA AAVKVGPCSL PGSRVGNYGG QVILPLAHTI EHEELLEVIK LEGAGHCPEE  540
AIMGRDMFLL QSHRQKGLPR AQRNKYLYSL ISRHCVLVFM LRPLCSGMDE NAVGICAELI  600
FAPIDASFAD DAPLLPSGFR IIPLDTGKEA SSPNRTLDLA SALEIGSAGN KACSNYTATG  660
GSTRSVMTIA FEFAFESHMQ ENVASMARQY VRSIISSVQR VALALSPSRL DGNGGVRPQL  720
GPPEAQTLAR WICQSYRCYL GVELLKAGGG VGSESILKSL WHHPDAATPV FTFANQAGLD  780
MLETTLAALQ DITLEKIFDD HGKRNLSSEF PQIMQQGFAC LQGGICLSSM GRPVSYERAV  840
AWKVLNEDEN AQCICFMFMN WSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258627.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A161XAD00.0A0A161XAD0_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g03740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]