PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 865aa MW: 95070 Da PI: 6.9908 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ DCAR_023074 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP | |||||||
2 | START | 177.8 | 6.5e-56 | 161 | 369 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l +++ DCAR_023074 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQ 257 789*******************************************************.8888888888****************9999********* PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ DCAR_023074 258 LYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLTNTQNGPSmppVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVL 355 ****************************************9988899*************************************************** PP HHHHHHHHTXXXXX CS START 192 gaktwvatlqrqce 205 ++kt++ +l+++++ DCAR_023074 356 AQKTTMTALRQLRQ 369 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.483 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 14 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.78E-17 | 17 | 77 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 17 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.1E-16 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.24E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 25.339 | 151 | 366 | IPR002913 | START domain |
CDD | cd08875 | 1.39E-77 | 155 | 371 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 9.8E-24 | 160 | 367 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.24E-39 | 160 | 372 | No hit | No description |
SMART | SM00234 | 3.0E-42 | 160 | 370 | IPR002913 | START domain |
Pfam | PF01852 | 2.2E-53 | 161 | 369 | IPR002913 | START domain |
Pfam | PF08670 | 1.0E-42 | 727 | 863 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MMSMSCKDGK GVMDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYDNGYFRQH 120 TQTSGLPTKD TSCESVVTSG QHHMTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW 180 VQMPGMKPGP DSIGIVAISH GCPGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL 240 NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVME DGSLVVCERS LTNTQNGPSM 300 PPVQNFVRAE MLPSGYLIRP CDGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSTVLAQKTT 360 MTALRQLRQI AQEASQSSAA NWGQRPVALR ALSQRLSRGF NEALNGFTDE GWSLMGTEGM 420 DDVTILVNSS PDKLMGLNLS FNNGFTPVSN GVLCAKASML LQNVPPAILL RFLREHRSEW 480 ADTNIDAYSA AAVKVGPCSL PGSRVGNYGG QVILPLAHTI EHEELLEVIK LEGAGHCPEE 540 AIMGRDMFLL QSHRQKGLPR AQRNKYLYSL ISRHCVLVFM LRPLCSGMDE NAVGICAELI 600 FAPIDASFAD DAPLLPSGFR IIPLDTGKEA SSPNRTLDLA SALEIGSAGN KACSNYTATG 660 GSTRSVMTIA FEFAFESHMQ ENVASMARQY VRSIISSVQR VALALSPSRL DGNGGVRPQL 720 GPPEAQTLAR WICQSYRCYL GVELLKAGGG VGSESILKSL WHHPDAATPV FTFANQAGLD 780 MLETTLAALQ DITLEKIFDD HGKRNLSSEF PQIMQQGFAC LQGGICLSSM GRPVSYERAV 840 AWKVLNEDEN AQCICFMFMN WSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017258627.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | A0A161XAD0 | 0.0 | A0A161XAD0_DAUCS; Uncharacterized protein | ||||
STRING | VIT_09s0002g03740.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023074 |
Publications ? help Back to Top | |||
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