PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16059.9 Da PI: 7.6765 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++ +Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++++g DCAR_023072 29 NYRGVR-KRYGSKWVSEIRVPRT---KSRIWLGTYSTPEMAARAHDVAALCIKG 78 69***8.445778*******954...4***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.77E-27 | 28 | 88 | No hit | No description |
PROSITE profile | PS51032 | 21.206 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-10 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-19 | 29 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-30 | 29 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
METRSTSSNS VEKEARPVRA EGSANKHTNY RGVRKRYGSK WVSEIRVPRT KSRIWLGTYS 60 TPEMAARAHD VAALCIKGDK NILNFPHLVD SLPRPGSTSP ADIRAAAAEA AAMDWPEPSA 120 SSSVDHDDFF NDLEDINIIM TWSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 20 | 87 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256078.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q39127 | 7e-37 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A164UYV9 | 1e-102 | A0A164UYV9_DAUCS; Uncharacterized protein | ||||
STRING | XP_008242523.1 | 5e-38 | (Prunus mume) | ||||
STRING | EMJ03663 | 5e-38 | (Prunus persica) | ||||
STRING | XP_004501158.1 | 2e-38 | (Cicer arietinum) | ||||
STRING | XP_004517241.1 | 2e-38 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023072 |
Publications ? help Back to Top | |||
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